Information on SUBCLASS 5.1.4 |
Subclass Accession number: 6343
Subclass: 5.1.4 Type: HA beta-beta hairpin DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 42 Average sequence ID (%) : 12.3 +/- 14.1 Average RMSD (Å) : 0.781 +/- 0.325 Consensus geometry
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Consensus Sequence: | XXpXpGXXX |
(φψ)-conformation: | bbpaagpbb |
Pattern: | x | x | x | x | x | x | [adgknqst] | x | [dehknqrstw] | [degnrs] | [adegknqrst] | x | x | [afgilpvwy] | x | [acfiklmtv] |
Conservation: | -0.593 | -0.740 | -0.584 | -0.374 | -0.559 | -0.177 | 0.605 | -0.344 | 0.686 | 3.442 | -0.142 | -0.333 | -0.200 | -0.204 | -0.509 | 0.027 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1amu_A_455 | 1amu | A | 459 | 474 | AVSVHKDHQEQPYLCA | EEEEEE-TTS-EEEEE | bbbbbbxaaUxwbxbb |
1apa_*_226 | 1apa | - | 229 | 244 | SPLELKNANGSKWIVL | EEEEEE-TTS-EEEEE | bpbbbbbaagxpbbba |
1bu6_O_287 | 1bu6 | O | 287 | 302 | LTTIACGPTGEVNYAL | EEEEEE-TTS-EEEEE | bbbbbbxaavxpbbbb |
1bv1_*_95 | 1bv1 | - | 101 | 116 | EIKIVATPDGGSILKI | EEEEEE-TTS-EEEEE | bbbxbxbaavxbbbxb |
1d0n_A_67 | 1d0n | A | 70 | 85 | ILKTVQLRNGILQYDL | EEEEEE-TTS-EEEEE | bbbbbxxaavxbbbbb |
1d4x_G_43 | 1d4x | G | 46 | 61 | ILKTVQLRNGNLQYDL | EEEEEE-TTSSEEEEE | bbbbbxbaagxxxbbb |
1d6a_A_222 | 1d6a | A | 225 | 240 | KPLELVDASGAKWIVL | EEEEEE-TTS-EEEEE | bpxxbbxaavxxbxba |
1e1o_A_120 | 1e1o | A | 124 | 139 | RGTLFKTQTGELSIHC | EEEEEE-TT--EEEEE | bbxxbbxaavxxbbxx |
1ecs_A_90 | 1ecs | A | 91 | 106 | IHAPELQGWGGTMAAL | EEEEEE-TTSSEEEEE | bbxpbpxaNgxbbbbb |
1eur_*_221 | 1eur | - | 223 | 238 | QQYTIINAAGAFQAVS | EEEEEE-TT--EEEEE | bxbbbbxaavxxbbbx |
1f7s_A_66 | 1f7s | A | 70 | 85 | YDFDFVTAENCQKSKI | EEEEEE-TTS-EEEEE | bxxbbbxaalbxbbbx |
1ff9_A_356 | 1ff9 | A | 362 | 377 | HKFEIENKDGSRETRT | EEEEEE-TTS-EEEEE | xbbxbbxaagpbbbbb |
1fwx_A_323 | 1fwx | A | 323 | 338 | PLHTAFDGRGNAYTSL | EEEEEE-TTSEEEEEE | xabbbbxaavxbbbxb |
1ghe_A_147 | 1ghe | A | 152 | 167 | LPGYCATPDGRLHPTA | EEEEEE-TTS-EEEEE | bxlabbxaavxxbxbb |
1gtm_A_35 | 1gtm | A | 39 | 54 | VTIPVEMDDGSVKVFT | EEEEEE-TTS-EEEEE | bxbwbxxaavbbbbbb |
1h6l_A_182 | 1h6l | A | 185 | 200 | QYELNADKNGYISGKK | EEEEEE-TTSSEEEEE | bbxxbxxaavbbbbbx |
1h6y_A_86 | 1h6y | A | 90 | 105 | MKLQYVDGSGTQRYDT | EEEEEE-TTS-EEEEE | bbbbbbxaavbxbbbx |
1hrd_A_56 | 1hrd | A | 60 | 75 | FRVPWEDDNGKVHVNT | EEEEEE-TTS-EEEEE | bxbwbbxaavxxbbbb |
1i7d_A_220 | 1i7d | A | 224 | 239 | VKAHIVTPADERFTAI | EEEEEE-TT--EEEEE | bbbxxbxaavxbbbbx |
1j1q_A_221 | 1j1q | A | 224 | 239 | KPLELKNADGTKWIVL | EEEEEE-TTS-EEEEE | bpbxbbxaavxxbxba |
1j9j_A_182 | 1j9j | A | 186 | 201 | YFEERVSPFGEKYYWM | EEEEEE-TTS-EEEEE | ebxxbbxaavxxbbbx |
1ju3_A_6 | 1ju3 | A | 10 | 25 | SNVMVPMRDGVRLAVD | EEEEEE-TTS-EEEEE | xlxxbxxaavxbbxbb |
1juv_A_2 | 1juv | A | 7 | 22 | RYSPTKTVDGFNELAF | EEEEEE-TTS-EEEEE | bbbxbbxaavxxbbxa |
1kjo_A_4 | 1kjo | A | 6 | 21 | TVGVGRGVLGDQKNIN | EEEEEE-TTS-EEEEE | bbbbbbxaavxxbxbx |
1mrj_*_208 | 1mrj | - | 211 | 226 | SPVVLINAQNQRVTIT | EEEEEE-TTS-EEEEE | bxbxbbxaavxxbbba |
1o75_A_69 | 1o75 | A | 80 | 95 | SKQETEDSRGRKKWEY | EEEEEE-TTS-EEEEE | bbbxbbxaavxbbxbb |
1oep_A_5 | 1oep | A | 7 | 22 | HGREVLDSRGNPTVEV | EEEEEE-TTS-EEEEE | bbbxbxxaavxwbxbb |
1ofz_A_73 | 1ofz | A | 76 | 91 | IRVYCVNKDNILSEFV | EEEEEE-TT-BEEEEE | bbbbbbxaalbpbbbb |
1olz_A_399 | 1olz | A | 403 | 418 | VVDRTQALDGTVYDVM | EEEEEE-TTS-EEEEE | bbbxbbxaavxxbxxx |
1one_A_4 | 1one | A | 6 | 21 | YARSVYDSRGNPTVEV | EEEEEE-TTS-EEEEE | bbbxbbxaavbwbxbb |
1pdz_*_4 | 1pdz | - | 6 | 21 | FARTIFDSRGNPTVEV | EEEEEE-TTS-EEEEE | bxbxbbxaavbwbxbb |
1pfo_*_404 | 1pfo | - | 410 | 425 | WDEVSYDKEGNEVLTH | EEEEEE-TTS-EEEEE | bbbxbbxaavxxbbbx |
1q16_A_450 | 1q16 | A | 456 | 471 | PVKRLQLADGSTALVT | EEEEEE-TTS-EEEEE | wbbxbxxaagxbbxbb |
1q8i_A_63 | 1q8i | A | 66 | 81 | TPLALKDFHRQPVYGL | EEEEEE-TTS-EEEEE | bxbabbxaavxxbbxx |
1qo8_A_271 | 1qo8 | A | 273 | 288 | VVKLVVNDDHSVVGAV | EEEEEE-TTSBEEEEE | xabxbbxaalbxaebx |
1sjy_A_74 | 1sjy | A | 81 | 96 | GAYLGRFPDGVLILRH | EEEEEE-TTS-EEEEE | ebbbbbxaavxxbbxb |
1usr_A_203 | 1usr | A | 208 | 223 | LGVLRTTATGRIFFST | EEEEEE-TTS-EEEEE | bbbxbbxaavxxbxbx |
1uuh_A_139 | 1uuh | A | 143 | 158 | ITITIVNRDGTRYVQK | EEEEEE-TT--EEEEE | xxbbbbxaavxxxbbb |
1v3e_A_377 | 1v3e | A | 381 | 396 | IIVVDKGLNSIPKLKV | EEEEEE-TT--EEEEE | bbxbbbbaaUxxbbbb |
1v8k_A_102 | 1v8k | A | 105 | 120 | VHEPKLKVDLTKYLEN | EEEEEE-TT--EEEEE | bxxwbbxaavxxbbbx |
1vjf_A_42 | 1vjf | A | 45 | 60 | KNLFLKDAKGQLWLIS | EEEEEEETTS-EEEEE | bbxbbbxaavxxbbbb |
3pro_C_48 | 3pro | C | 50 | 65 | GSWIERNEDGSFKLVA | EEEEEE-TTS-EEEEE | ebbxbxxaavxbbbbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1h6y_A_86 | 1h6y | A | XBAXYLAN BINDING SITE FOR CHAIN A | Y - 103 |
1oep_A_5 | 1oep | A | AC5EDO BINDING SITE FOR CHAIN A | E - 10 |
1ofz_A_73 | 1ofz | A | AC1FUL BINDING SITE FOR CHAIN A | I - 76 |
1ofz_A_73 | 1ofz | A | AC2AFL BINDING SITE FOR CHAIN A | R - 77 |
1ofz_A_73 | 1ofz | A | AC2AFL BINDING SITE FOR CHAIN A | E - 89 |
1ofz_A_73 | 1ofz | A | AC1FUL BINDING SITE FOR CHAIN A | Y - 92 |
Clusters included in this Subclass |
CLUSTER: HA.4.63 |
CLUSTER: HA.5.19 |
CLUSTER: HA.6.88 |