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Information on SUBCLASS 5.1.6
Subclass Accession number: 6345
Subclass: 5.1.6 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 20

Average sequence ID (%) : 23.5 +/- 24.9
Average RMSD (Å) : 0.440 +/- 0.204

Consensus geometry
d (Å): 3 delta (°): 45-90 theta (°): 135-180 rho (°): 135-180
Consensus Sequence: XhXXpGpXh
(φψ)-conformation: bbpaagpbb
Pattern: x[gikltv][dgnstv][aeknrs][ADEKNQRS][DGNS][dekrt]x[cfiltvy]
Conservation:-1.211-0.166-0.040-0.1580.3522.2750.348-0.898-0.502
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1b56_*_731b56   -7583ETTADGRKTEE-TTS-EEbxxaavxbb
1cv8_*_1561cv8   -157165IPVSNGDHYEE-TTS-EExwbaavxbb
1dgf_A_2201dgf   A222230LVNANGEAVEE-TTS-EEbbxaavxbb
1e93_A_1991e93   A201209FINKDNERFEE-TT--EEbbxaavxbb
1fdq_A_701fdq   A7280ETTADDRNCEE-TT--EEbbxaavbxb
1fp3_A_3611fp3   A361369YLNREGKVAEE-TTS-EEbbxaavxxa
1gvp_*_141gvp   -1826GVSRQGKPYEE-TTS-EEebpaagxwb
1gwe_A_2051gwe   A207215WVNAQGEKHEE-TT--EEbbxaavxbb
1hms_*_701hms   -7280ETTADDRKVEE-TT--EEbbxaavxbb
1kqf_A_1461kqf   A147155EKNEQGVTVEE-TTS-EEabxaavxxa
1lid_*_701lid   -7280EITADDRKVEE-TT--EEbbxaavxbb
1m7s_A_2221m7s   A224232LVNAKGEVHEE-TTS-EExbxaavxbb
1o8v_A_711o8v   A7381EVTPDSREVEE-TT--EEbbxaavxxb
1oj5_A_3281oj5   A330338FILNDGTMLEE-TTS-EEbbxaavxxb
1p80_A_2771p80   A279287LINAEGKATEE-TT--EEbbxaavxbb
1pgu_A_801pgu   A8391SGDESGKVIEEETTSEEEbbbaavbbb
1qng_A_451qng   A4553KIGSRGKNLEE-TTSSEEbbxaavxxp
1qwl_A_2011qwl   A203211LINAKGERFEE-TT--EEbbxaavxbb
1si8_A_1991si8   A201209WVNAAGEVFEE-TT--EEbbxaavxbb
4blc_A_2194blc   A221229LVNADGEAVEE-TT--EEbbxaavxxb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1b56_*_731b56   *     PLMPALMITIC ACID T - 77
1b56_*_731b56   *     PLMPALMITIC ACID A - 78
1b56_*_731b56   *     PLMPALMITIC ACID D - 79
1b56_*_731b56   *     PLMPALMITIC ACID R - 81
1cv8_*_1561cv8   *     E64N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE Y - 168
1dgf_A_2201dgf   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE H - 235
1dgf_A_2201dgf   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE K - 237
1e93_A_1991e93   A     HEMPROTOPORPHYRIN IX CONTAINING FE Y - 199
1fdq_A_701fdq   A     HXADOCOSA-4,7,10,13,16,19-HEXAENOIC ACID E - 72
1fdq_A_701fdq   A     HXADOCOSA-4,7,10,13,16,19-HEXAENOIC ACID T - 73
1fdq_A_701fdq   A     HXADOCOSA-4,7,10,13,16,19-HEXAENOIC ACID T - 74
1fdq_A_701fdq   A     HXADOCOSA-4,7,10,13,16,19-HEXAENOIC ACID A - 75
1fdq_A_701fdq   A     HXADOCOSA-4,7,10,13,16,19-HEXAENOIC ACID D - 76
1fdq_A_701fdq   A     HXADOCOSA-4,7,10,13,16,19-HEXAENOIC ACID R - 78
1hms_*_701hms   *     OLAOLEIC ACID T - 74
1hms_*_701hms   *     OLAOLEIC ACID A - 75
1hms_*_701hms   *     OLAOLEIC ACID D - 76
1hms_*_701hms   *     OLAOLEIC ACID R - 78
1o8v_A_711o8v   A     CSOS-HYDROXYCYSTEINE F - 71
1o8v_A_711o8v   A     CSOS-HYDROXYCYSTEINE E - 73
1o8v_A_711o8v   A     PLMPALMITIC ACID T - 75
1o8v_A_711o8v   A     PLMPALMITIC ACID P - 76
1o8v_A_711o8v   A     PLMPALMITIC ACID D - 77
1o8v_A_711o8v   A     PLMPALMITIC ACID R - 79
1o8v_A_711o8v   A     CSOS-HYDROXYCYSTEINE S - 83
1o8v_A_711o8v   A     CSOS-HYDROXYCYSTEINE I - 85
4blc_A_2194blc   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE H - 234
4blc_A_2194blc   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE K - 236
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1o8v_A_711o8v   A AC2PLM BINDING SITE FOR CHAIN AD - 77
1o8v_A_711o8v   A AC2PLM BINDING SITE FOR CHAIN AR - 79
1oj5_A_3281oj5   A AC2IOD BINDING SITE FOR CHAIN AH - 341
1oj5_A_3281oj5   A AC2IOD BINDING SITE FOR CHAIN AR - 343

Clusters included in this Subclass
CLUSTER: HA.4.71
CLUSTER: HA.4.76
CLUSTER: HA.5.50