Information on SUBCLASS 5.2.3 |
Subclass Accession number: 6355
Subclass: 5.2.3 Type: HA beta-beta hairpin DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 40 Average sequence ID (%) : 16.8 +/- 21.8 Average RMSD (Å) : 0.475 +/- 0.233 Consensus geometry
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Consensus Sequence: | XhpXcXppX |
(φψ)-conformation: | bbpaalabb |
Pattern: | x | [acfikltv] | [cdhknrstw] | x | [adgkns] | [degkqrs] | [adegknqrst] | x | x | x |
Conservation: | -0.666 | 0.628 | 0.086 | -1.021 | 1.548 | 1.627 | 0.175 | -0.782 | -1.076 | -0.518 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1agd_A_121 | 1agd | A | 125 | 134 | ALNEDLRSWT | EE-TTSS-EE | bxxaalabbb |
1aqk_H_45 | 1aqk | H | 50 | 59 | FISYDGSKNY | EE-TTSS-EE | bbxaavabbb |
1crz_A_229 | 1crz | A | 229 | 238 | AFSPDGSKLA | EE-TTSS-EE | bxxaavabbb |
1crz_A_378 | 1crz | A | 382 | 391 | LVSTDGRFKA | EE-TTS--EE | bbxaavabbb |
1eaf_*_486 | 1eaf | - | 487 | 496 | SLAPSGQALI | EE-TTSS-EE | bxxaavabbb |
1ejo_H_2544 | 1ejo | H | 2549 | 2558 | TISSGGAYTY | EE-SSS--EE | bbxaavabbb |
1g0w_A_216 | 1g0w | A | 218 | 227 | WHNDNKTFLV | EEETTS-EEE | bbxaalabbb |
1g6s_A_63 | 1g6s | A | 65 | 74 | TLSADRTRCE | EE-TTS--EE | bbxaavabbb |
1h0d_B_45 | 1h0d | B | 50 | 59 | TISSGGGNTY | EE-TTSS-EE | bbxaavabbb |
1hil_B_45 | 1hil | B | 50 | 59 | TISNGGGYTY | EE-TTS--EE | bbxaavabbb |
1hsb_A_121 | 1hsb | A | 125 | 134 | ALKEDLRSWT | EE-TTSS-EE | bxxaalabbb |
1i4f_A_121 | 1i4f | A | 125 | 134 | ALKEDLRSWT | EE-TTSSSEE | bxxaavabbb |
1i8k_B_345 | 1i8k | B | 350 | 359 | SISTGGYNTY | EE-TTSS-EE | bbxaavabbb |
1ikf_H_45 | 1ikf | H | 50 | 59 | FISNGGGSAF | EE-TTSS-EE | bbxaagabbb |
1jmx_B_299 | 1jmx | B | 301 | 310 | AFDKKGDKLY | EE-SSSS-EE | bbxaavabbx |
1k32_A_344 | 1k32 | A | 347 | 356 | IQDVSGTYVL | EE-TTSSSEE | bbxaavabbb |
1k32_A_452 | 1k32 | A | 453 | 462 | TISDNSRFIA | EE-TTS-EEE | bbxaaUabbb |
1k5n_A_121 | 1k5n | A | 125 | 134 | ALNEDLSSWT | EE-TTSS-EE | bxxaavNbbb |
1lf6_A_107 | 1lf6 | A | 111 | 120 | NTDKKGRYRI | EEETTSSEEE | bbpaalabbb |
1lk2_A_121 | 1lk2 | A | 125 | 134 | ALNEDLKTWT | EE-TTSS-EE | bxxaavabbb |
1lwd_A_291 | 1lwd | A | 295 | 304 | LVCPDGKTIE | EE-TTSS-EE | xbxaavaxbb |
1m15_A_209 | 1m15 | A | 211 | 220 | FHNDAKTFLV | EEETTSSEEE | xbxaavabbb |
1mda_H_69 | 1mda | H | 71 | 80 | VAGHSGSDFA | EE-TTSS-EE | bbxaavabbb |
1mqk_H_45 | 1mqk | H | 50 | 59 | SINNGGGRTY | EE-TTSS-EE | bbxaavabbb |
1n16_A_216 | 1n16 | A | 218 | 227 | WHNNDKTFLV | EEETTSSEEE | bbxaalabbb |
1nl0_H_45 | 1nl0 | H | 50 | 59 | IISYDGSKKY | EE-TTSS-EE | bbpaavabbb |
1o4z_A_171 | 1o4z | A | 176 | 185 | LLSADDTQEI | EEETTSSEEE | bbxaavabbb |
1oi4_A_63 | 1oi4 | A | 64 | 73 | VKGKKGEASV | EE-TTSS-EE | bbxaavabbb |
1ol0_A_46 | 1ol0 | A | 50 | 59 | AVSGSGGSTY | EE-TTS--EE | bbxaavabbb |
1orv_A_310 | 1orv | A | 315 | 324 | WIRRAQNYSI | EEETTSSEEE | bbxaavabbb |
1qd0_A_49 | 1qd0 | A | 53 | 62 | AIRWSGKETW | EE-TTSS-EE | bbxaavabbb |
1qh4_A_216 | 1qh4 | A | 218 | 227 | WHNDNKTFLV | EEETTSSEEE | bbxaavabbb |
1qkz_H_45 | 1qkz | H | 50 | 59 | TISDGGAYTY | EE-TTSS-EE | bbxaavabbb |
1tol_A_36 | 1tol | A | 45 | 54 | VCTGDETQCY | EE-TTSSSEE | bbxaavabbb |
1ucb_H_45 | 1ucb | H | 50 | 59 | YISQGGDITD | EE-TTS--EE | bbxaavabbb |
2crk_A_216 | 2crk | A | 218 | 227 | WHNDNKSFLV | EEETTSSEEE | bbxaavabbb |
2fb4_H_45 | 2fb4 | H | 50 | 59 | IIWDDGSDQH | EE-TTSS-EE | bbpaavabbb |
2fbj_H_45 | 2fbj | H | 50 | 59 | EIHPDSGTIN | EE-TTSS-EE | bbxaaUabbb |
2hrp_H_45 | 2hrp | H | 50 | 59 | YISSGSSTIY | EE-TTSS-EE | bbxaavabbb |
8fab_B_45 | 8fab | B | 50 | 59 | VIWYNGSRTY | EE-TTSS-EE | bbpaavabbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1h0d_B_45 | 1h0d | B | SB1SO4 BINDING SITE FOR CHAIN B | G - 54 |
1ol0_A_46 | 1ol0 | A | AC6GOL BINDING SITE FOR CHAIN A | T - 58 |
1ol0_A_46 | 1ol0 | A | AC6GOL BINDING SITE FOR CHAIN A | Y - 60 |
Clusters included in this Subclass |
CLUSTER: HA.5.16 |
CLUSTER: HA.6.22 |