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Information on SUBCLASS 5.2.3
Subclass Accession number: 6355
Subclass: 5.2.3 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 40

Average sequence ID (%) : 16.8 +/- 21.8
Average RMSD (Å) : 0.475 +/- 0.233

Consensus geometry
d (Å): 7 delta (°): 90-135 theta (°): 135-180 rho (°): 270-315
Consensus Sequence: XhpXcXppX
(φψ)-conformation: bbpaalabb
Pattern: x[acfikltv][cdhknrstw]x[adgkns][degkqrs][adegknqrst]xxx
Conservation:-0.6660.6280.086-1.0211.5481.6270.175-0.782-1.076-0.518
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1agd_A_1211agd   A125134ALNEDLRSWTEE-TTSS-EEbxxaalabbb
1aqk_H_451aqk   H5059FISYDGSKNYEE-TTSS-EEbbxaavabbb
1crz_A_2291crz   A229238AFSPDGSKLAEE-TTSS-EEbxxaavabbb
1crz_A_3781crz   A382391LVSTDGRFKAEE-TTS--EEbbxaavabbb
1eaf_*_4861eaf   -487496SLAPSGQALIEE-TTSS-EEbxxaavabbb
1ejo_H_25441ejo   H25492558TISSGGAYTYEE-SSS--EEbbxaavabbb
1g0w_A_2161g0w   A218227WHNDNKTFLVEEETTS-EEEbbxaalabbb
1g6s_A_631g6s   A6574TLSADRTRCEEE-TTS--EEbbxaavabbb
1h0d_B_451h0d   B5059TISSGGGNTYEE-TTSS-EEbbxaavabbb
1hil_B_451hil   B5059TISNGGGYTYEE-TTS--EEbbxaavabbb
1hsb_A_1211hsb   A125134ALKEDLRSWTEE-TTSS-EEbxxaalabbb
1i4f_A_1211i4f   A125134ALKEDLRSWTEE-TTSSSEEbxxaavabbb
1i8k_B_3451i8k   B350359SISTGGYNTYEE-TTSS-EEbbxaavabbb
1ikf_H_451ikf   H5059FISNGGGSAFEE-TTSS-EEbbxaagabbb
1jmx_B_2991jmx   B301310AFDKKGDKLYEE-SSSS-EEbbxaavabbx
1k32_A_3441k32   A347356IQDVSGTYVLEE-TTSSSEEbbxaavabbb
1k32_A_4521k32   A453462TISDNSRFIAEE-TTS-EEEbbxaaUabbb
1k5n_A_1211k5n   A125134ALNEDLSSWTEE-TTSS-EEbxxaavNbbb
1lf6_A_1071lf6   A111120NTDKKGRYRIEEETTSSEEEbbpaalabbb
1lk2_A_1211lk2   A125134ALNEDLKTWTEE-TTSS-EEbxxaavabbb
1lwd_A_2911lwd   A295304LVCPDGKTIEEE-TTSS-EExbxaavaxbb
1m15_A_2091m15   A211220FHNDAKTFLVEEETTSSEEExbxaavabbb
1mda_H_691mda   H7180VAGHSGSDFAEE-TTSS-EEbbxaavabbb
1mqk_H_451mqk   H5059SINNGGGRTYEE-TTSS-EEbbxaavabbb
1n16_A_2161n16   A218227WHNNDKTFLVEEETTSSEEEbbxaalabbb
1nl0_H_451nl0   H5059IISYDGSKKYEE-TTSS-EEbbpaavabbb
1o4z_A_1711o4z   A176185LLSADDTQEIEEETTSSEEEbbxaavabbb
1oi4_A_631oi4   A6473VKGKKGEASVEE-TTSS-EEbbxaavabbb
1ol0_A_461ol0   A5059AVSGSGGSTYEE-TTS--EEbbxaavabbb
1orv_A_3101orv   A315324WIRRAQNYSIEEETTSSEEEbbxaavabbb
1qd0_A_491qd0   A5362AIRWSGKETWEE-TTSS-EEbbxaavabbb
1qh4_A_2161qh4   A218227WHNDNKTFLVEEETTSSEEEbbxaavabbb
1qkz_H_451qkz   H5059TISDGGAYTYEE-TTSS-EEbbxaavabbb
1tol_A_361tol   A4554VCTGDETQCYEE-TTSSSEEbbxaavabbb
1ucb_H_451ucb   H5059YISQGGDITDEE-TTS--EEbbxaavabbb
2crk_A_2162crk   A218227WHNDNKSFLVEEETTSSEEEbbxaavabbb
2fb4_H_452fb4   H5059IIWDDGSDQHEE-TTSS-EEbbpaavabbb
2fbj_H_452fbj   H5059EIHPDSGTINEE-TTSS-EEbbxaaUabbb
2hrp_H_452hrp   H5059YISSGSSTIYEE-TTSS-EEbbxaavabbb
8fab_B_458fab   B5059VIWYNGSRTYEE-TTSS-EEbbpaavabbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1crz_A_2291crz   A     MSESELENOMETHIONINE S - 235
1crz_A_2291crz   A     MSESELENOMETHIONINE K - 236
1crz_A_2291crz   A     MSESELENOMETHIONINE L - 237
1crz_A_2291crz   A     MSESELENOMETHIONINE A - 238
1crz_A_2291crz   A     MSESELENOMETHIONINE F - 239
1crz_A_3781crz   A     MSESELENOMETHIONINE S - 378
1crz_A_3781crz   A     MSESELENOMETHIONINE L - 382
1crz_A_3781crz   A     MSESELENOMETHIONINE V - 383
1crz_A_3781crz   A     MSESELENOMETHIONINE S - 384
1crz_A_3781crz   A     MSESELENOMETHIONINE T - 385
1g6s_A_631g6s   A     FMTFORMIC ACID S - 63
1g6s_A_631g6s   A     FMTFORMIC ACID Y - 64
1g6s_A_631g6s   A     FMTFORMIC ACID T - 65
1g6s_A_631g6s   A     FMTFORMIC ACID L - 66
1g6s_A_631g6s   A     FMTFORMIC ACID S - 67
1g6s_A_631g6s   A     FMTFORMIC ACID R - 72
1g6s_A_631g6s   A     FMTFORMIC ACID C - 73
1g6s_A_631g6s   A     FMTFORMIC ACID E - 74
1i4f_A_1211i4f   A     1PG2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL D - 122
1ikf_H_451ikf   H     BMT4-METHYL-4-[(E)-2-BUTENYL]-4,N-METHYL-THREONINE F - 50
1ikf_H_451ikf   H     MVAN-METHYLVALINE F - 50
1ikf_H_451ikf   H     MLEN-METHYLLEUCINE N - 53
1ikf_H_451ikf   H     BMT4-METHYL-4-[(E)-2-BUTENYL]-4,N-METHYL-THREONINE F - 59
1k5n_A_1211k5n   A     GOLGLYCEROL D - 122
1k5n_A_1211k5n   A     GOLGLYCEROL A - 125
1k5n_A_1211k5n   A     GOLGLYCEROL N - 127
1k5n_A_1211k5n   A     GOLGLYCEROL T - 134
1lwd_A_2911lwd   A     ICTISOCITRIC ACID S - 293
1lwd_A_2911lwd   A     ICTISOCITRIC ACID E - 306
1m15_A_2091m15   A     MGMAGNESIUM ION W - 221
1m15_A_2091m15   A     ADPADENOSINE-5'-DIPHOSPHATE W - 221
1nl0_H_451nl0   H     CGUGAMMA-CARBOXY-GLUTAMIC ACID S - 52
1o4z_A_1711o4z   A     EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID A - 171
1o4z_A_1711o4z   A     EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID D - 173
1o4z_A_1711o4z   A     EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID W - 175
1o4z_A_1711o4z   A     EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID E - 184
1o4z_A_1711o4z   A     EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID D - 186
1o4z_A_1711o4z   A     EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID L - 188
1o4z_A_1711o4z   A     EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID E - 189
1ol0_A_461ol0   A     MSESELENOMETHIONINE S - 49
1ol0_A_461ol0   A     MSESELENOMETHIONINE A - 50
1ol0_A_461ol0   A     MSESELENOMETHIONINE V - 51
1ol0_A_461ol0   A     MSESELENOMETHIONINE S - 52
1ol0_A_461ol0   A     MSESELENOMETHIONINE G - 53
1ol0_A_461ol0   A     GOLGLYCEROL T - 58
1ol0_A_461ol0   A     GOLGLYCEROL Y - 60
1orv_A_3101orv   A     NAGN-ACETYL-D-GLUCOSAMINE R - 317
1orv_A_3101orv   A     NAGN-ACETYL-D-GLUCOSAMINE A - 319
1orv_A_3101orv   A     NAGN-ACETYL-D-GLUCOSAMINE N - 321
1orv_A_3101orv   A     NAGN-ACETYL-D-GLUCOSAMINE Y - 322
1qd0_A_491qd0   A     RR63-HYDROXY-7-(4-{1-[2-HYDROXY-3-(2-HYDROXY-5-SULFO-PHENYLAZO)-BENZYL]-2-SULFO-ETHYLAMINO}-[1,2,5]TRIAZIN-2-YLAMINO)-2-(2-HYDROXY-5-SULFO-PHENYLAZO)-NAPTHALENE-1,8-DISULFONIC ACID I - 54
1qd0_A_491qd0   A     RR63-HYDROXY-7-(4-{1-[2-HYDROXY-3-(2-HYDROXY-5-SULFO-PHENYLAZO)-BENZYL]-2-SULFO-ETHYLAMINO}-[1,2,5]TRIAZIN-2-YLAMINO)-2-(2-HYDROXY-5-SULFO-PHENYLAZO)-NAPTHALENE-1,8-DISULFONIC ACID R - 55
1qd0_A_491qd0   A     CUCOPPER (II) ION W - 56
1qd0_A_491qd0   A     RR63-HYDROXY-7-(4-{1-[2-HYDROXY-3-(2-HYDROXY-5-SULFO-PHENYLAZO)-BENZYL]-2-SULFO-ETHYLAMINO}-[1,2,5]TRIAZIN-2-YLAMINO)-2-(2-HYDROXY-5-SULFO-PHENYLAZO)-NAPTHALENE-1,8-DISULFONIC ACID W - 56
1qd0_A_491qd0   A     RR63-HYDROXY-7-(4-{1-[2-HYDROXY-3-(2-HYDROXY-5-SULFO-PHENYLAZO)-BENZYL]-2-SULFO-ETHYLAMINO}-[1,2,5]TRIAZIN-2-YLAMINO)-2-(2-HYDROXY-5-SULFO-PHENYLAZO)-NAPTHALENE-1,8-DISULFONIC ACID S - 57
1qd0_A_491qd0   A     RR63-HYDROXY-7-(4-{1-[2-HYDROXY-3-(2-HYDROXY-5-SULFO-PHENYLAZO)-BENZYL]-2-SULFO-ETHYLAMINO}-[1,2,5]TRIAZIN-2-YLAMINO)-2-(2-HYDROXY-5-SULFO-PHENYLAZO)-NAPTHALENE-1,8-DISULFONIC ACID G - 58
1qd0_A_491qd0   A     RR63-HYDROXY-7-(4-{1-[2-HYDROXY-3-(2-HYDROXY-5-SULFO-PHENYLAZO)-BENZYL]-2-SULFO-ETHYLAMINO}-[1,2,5]TRIAZIN-2-YLAMINO)-2-(2-HYDROXY-5-SULFO-PHENYLAZO)-NAPTHALENE-1,8-DISULFONIC ACID K - 59
2fbj_H_452fbj   H     NAGN-ACETYL-D-GLUCOSAMINE E - 50
2fbj_H_452fbj   H     NAGN-ACETYL-D-GLUCOSAMINE T - 57
2fbj_H_452fbj   H     NAGN-ACETYL-D-GLUCOSAMINE I - 58
2fbj_H_452fbj   H     NAGN-ACETYL-D-GLUCOSAMINE N - 59
2fbj_H_452fbj   H     NAGN-ACETYL-D-GLUCOSAMINE Y - 60
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1h0d_B_451h0d   B SB1SO4 BINDING SITE FOR CHAIN BG - 54
1ol0_A_461ol0   A AC6GOL BINDING SITE FOR CHAIN AT - 58
1ol0_A_461ol0   A AC6GOL BINDING SITE FOR CHAIN AY - 60

Clusters included in this Subclass
CLUSTER: HA.5.16
CLUSTER: HA.6.22