Information on SUBCLASS 5.4.5 |
Subclass Accession number: 6366
Subclass: 5.4.5 Type: HA beta-beta hairpin DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 6 Average sequence ID (%) : 16.1 +/- 14.7 Average RMSD (Å) : 0.733 +/- 0.288 Consensus geometry
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Consensus Sequence: | XXppXGpXh |
(φψ)-conformation: | bbpaalpbb |
Pattern: | [adest] | x | [dt] | [ns] | x | [G] | [ENQRT] | x | [flvy] | x | [aers] | x |
Conservation: | -0.444 | -0.232 | 0.036 | 0.292 | -0.696 | 3.025 | 0.196 | -0.419 | -0.321 | -0.592 | -0.376 | -0.469 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1eag_A_241 | 1eag | A | 243 | 254 | TQDSNGNSFYEV | EE-TTS-EEEEE | bbxaavxxbxxb |
1ftp_A_72 | 1ftp | A | 74 | 85 | EETLDGRKVKST | EE-TTS-EEEEE | bbxaavxbbbbb |
1gbg_*_39 | 1gbg | - | 40 | 51 | SMTSLGEMRLSL | EE-TTS-EEEEE | bbxaavbxbbbb |
1oj5_A_328 | 1oj5 | A | 330 | 341 | FILNDGTMLSAH | EE-TTS-EEEEE | bbxaavxxbbbb |
1uwv_A_17 | 1uwv | A | 23 | 34 | DLDSFGQGVARH | EE-TTSEEEEEE | bbxaavxxbbbb |
3pvi_A_59 | 3pvi | A | 59 | 70 | AVDNAGQEYELK | EE-TT--EEEEE | bbxaavxxbxbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1gbg_*_39 | 1gbg | * | CACALCIUM ION | L - 44 |
1gbg_*_39 | 1gbg | * | CACALCIUM ION | G - 45 |
1gbg_*_39 | 1gbg | * | CACALCIUM ION | E - 46 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1oj5_A_328 | 1oj5 | A | AC2IOD BINDING SITE FOR CHAIN A | H - 341 |
1oj5_A_328 | 1oj5 | A | AC2IOD BINDING SITE FOR CHAIN A | R - 343 |
3pvi_A_59 | 3pvi | A | CA1CATALYTIC RESIDUES-FIRST MONOMER | E - 68 |
3pvi_A_59 | 3pvi | A | CA1CATALYTIC RESIDUES-FIRST MONOMER | K - 70 |
Clusters included in this Subclass |
CLUSTER: HA.4.144 |
CLUSTER: HA.5.118 |