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Information on SUBCLASS 5.5.1
Subclass Accession number: 6374
Subclass: 5.5.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 20

Average sequence ID (%) : 13.8 +/- 17.7
Average RMSD (Å) : 0.625 +/- 0.363

Consensus geometry
d (Å): 9 delta (°): 135-180 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: XpXppXpXX
(φψ)-conformation: bbaaalpba
Pattern: xxx[GILMVW][acfilvy][cdknrs]x[adegknqs][DKNSTY]x[deknqrsty][fiklv][aiklmv][adgkn]
Conservation:-1.416-1.256-1.1511.492-1.0210.147-0.2450.7141.783-0.0160.1150.4800.796-0.423
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1apa_*_661apa   -6780ITLMLKRNNLYVMGEEEEEETTT--EEEbbbbbxaaNvxxae
1bob_*_1741bob   -176189IYWLLNKKTKELIGEEEEEETTT--EEEbbbbbxaaavxxab
1ddz_A_2831ddz   A285298QGVVYGVGDGKLRDEEEEE-TTTT--EEbbbbbbaaNvxxbx
1evh_A_451evh   A4760RVVGRKIQDHQVVIEEEEEETTT--EEEbbbbbpaaaUxxab
1eys_H_1781eys   H181194YLEVEVAANKKKVLEEEEEETTT--EEEbbxbxxaaNlxxbx
1hkf_A_871hkf   A90103WCRIYRPSDNSVSKEEEEE-TTT--EEEbxbbbxaaNvxxab
1j1q_A_611j1q   A6275ITLMLRRNNLYVMGEEEEEETTT--EEEbbxbbxaaNlxxae
1jeh_A_4081jeh   A409422VKILIDSKTERILGEEEEEETTT-BEEEbbbbbxaaaUxxab
1lcs_A_81lcs   A1124TWTITNLVTGTKANEEEEEETTT--EEEbbbbbxaaavxxab
1lp8_A_611lp8   A6376VSLGLRRENLYVVAEEEEEETTT--EEEbbbbbxaaNvxxab
1lvl_*_3881lvl   -389402VRVVARRDNHLILGEEEEEETTT-BEEEbbbbbxaaNUxxab
1orv_A_751orv   A7588NILLFNAEYGNSSIEEEEEETTT---EExxbbxbaaavxxbx
1qi7_A_601qi7   A6275VSLGLKRDNLYVVAEEEEEETTT--EEEbbbbbxaaNvxxab
1qme_A_2881qme   A290303TATLVSAKTGEILAEEEEEETTT-BEEEbbbbbxaaavxxab
1ry6_A_2131ry6   A217230NIDLKDINKNTSLGEEEEEETTTTEEEExbbxbxaaalbxae
1s5p_A_1481s5p   A150163LLKVRCSQSGQVLDEEEEEETTT--EEEaabbbxaaavpbbp
1sqh_A_2111sqh   A211224SLGICRSDTGELIAEEEEEETTT--EEEbbbbbxaaavxxab
2bbk_H_2972bbk   H299312FVVVLDAKTGERLAEEEEEETTT--EEEbbxbbxaaavxxab
3eip_A_23eip   A518DLTWFDKSTEDFKGEEEEEETTT--EEEbbbbbxaaavxxab
3lad_A_4013lad   A402415VKVIADAKTDRVLGEEEEEETTT-BEEEbbbbbxaaavxxab
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1lcs_A_81lcs   A     NAGN-ACETYL-D-GLUCOSAMINE N - 9
1lcs_A_81lcs   A     NAGN-ACETYL-D-GLUCOSAMINE T - 11
1lcs_A_81lcs   A     NAGN-ACETYL-D-GLUCOSAMINE K - 22
1lcs_A_81lcs   A     NAGN-ACETYL-D-GLUCOSAMINE A - 23
1lcs_A_81lcs   A     NAGN-ACETYL-D-GLUCOSAMINE N - 24
1lcs_A_81lcs   A     NAGN-ACETYL-D-GLUCOSAMINE A - 25
1lcs_A_81lcs   A     NAGN-ACETYL-D-GLUCOSAMINE T - 26
1lcs_A_81lcs   A     NAGN-ACETYL-D-GLUCOSAMINE S - 27
1lcs_A_81lcs   A     NAGN-ACETYL-D-GLUCOSAMINE M - 28
1lcs_A_81lcs   A     NAGN-ACETYL-D-GLUCOSAMINE L - 29
1orv_A_751orv   A     NAGN-ACETYL-D-GLUCOSAMINE N - 75
1orv_A_751orv   A     NAGN-ACETYL-D-GLUCOSAMINE L - 78
1orv_A_751orv   A     NAGN-ACETYL-D-GLUCOSAMINE F - 79
1orv_A_751orv   A     NAGN-ACETYL-D-GLUCOSAMINE N - 80
1orv_A_751orv   A     NAGN-ACETYL-D-GLUCOSAMINE Y - 83
1orv_A_751orv   A     NAGN-ACETYL-D-GLUCOSAMINE N - 85
1orv_A_751orv   A     NAGN-ACETYL-D-GLUCOSAMINE S - 86
1orv_A_751orv   A     NAGN-ACETYL-D-GLUCOSAMINE S - 87
1orv_A_751orv   A     NAGN-ACETYL-D-GLUCOSAMINE I - 88
1s5p_A_1481s5p   A     ZNZINC ION C - 155
1s5p_A_1481s5p   A     ZNZINC ION S - 156
1s5p_A_1481s5p   A     ZNZINC ION Q - 157
1s5p_A_1481s5p   A     ZNZINC ION S - 158
1s5p_A_1481s5p   A     ZNZINC ION G - 159
1s5p_A_1481s5p   A     ZNZINC ION Q - 160
1sqh_A_2111sqh   A     MSESELENOMETHIONINE S - 211
1sqh_A_2111sqh   A     MSESELENOMETHIONINE L - 212
1sqh_A_2111sqh   A     MSESELENOMETHIONINE L - 222
1sqh_A_2111sqh   A     MSESELENOMETHIONINE W - 225
1sqh_A_2111sqh   A     MSESELENOMETHIONINE I - 226
1sqh_A_2111sqh   A     MSESELENOMETHIONINE F - 227

Clusters included in this Subclass
CLUSTER: HA.4.80
CLUSTER: HA.6.15