Information on SUBCLASS 5.8.1 |
Subclass Accession number: 6382
Subclass: 5.8.1 Type: HA beta-beta hairpin DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 11 Average sequence ID (%) : 10.5 +/- 12.4 Average RMSD (Å) : 0.645 +/- 0.157 Consensus geometry
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Consensus Sequence: | hXXpchpXX |
(φψ)-conformation: | bbapllpbb |
Pattern: | [aimvy] | [adstv] | [fgilmptv] | [aciklmt] | [eknpqst] | [dehkqrw] | [gkv] | [acgk] | [EHKQRTY] | x | x | x |
Conservation: | 0.770 | -0.439 | -0.668 | -0.432 | -0.300 | -0.520 | 2.322 | 1.115 | 0.666 | -0.976 | -0.721 | -0.817 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1h8u_A_92 | 1h8u | A | 93 | 104 | VALCTRGGYWRR | EEEETTTT-EEE | bbbxabgvxxbx |
1jov_A_31 | 1jov | A | 33 | 44 | AKISLQGAQLIS | EEEETBTTEEEE | bbbxaxvlbpab |
1lur_A_1015 | 1lur | A | 1016 | 1027 | ATLLPFGATLAK | EEEETBTTEEEE | bbbbwxvlxxab |
1m2r_A_97 | 1m2r | A | 100 | 111 | IVRDQHSKTPSL | EEE-TTT--EEE | bbxpabNvxxbx |
1n0u_A_379 | 1n0u | A | 385 | 396 | MVPTSDKGRFYA | EEEBSSTT-EEE | bbxbaxlvxbbx |
1nsz_A_24 | 1nsz | A | 25 | 36 | ISFTNLGARIVD | EEEETBTTEEEE | bbbbaxvlbxab |
1o80_A_40 | 1o80 | A | 42 | 53 | IATMKKKGEKRC | EEEESSTT-EEE | bbbxaxUlxxbx |
1pgu_A_458 | 1pgu | A | 460 | 471 | AVGLEEGNTIQV | EEEETTTS-EEE | xbxxabvlxbbb |
1qfm_A_151 | 1qfm | A | 154 | 165 | KFMKVDGAKELP | EEEETTTTEEEE | bbbxaxvlxxba |
1snz_A_30 | 1snz | A | 31 | 42 | VDIISWGCTITA | EEEETBTTEEEE | bbbbaxvlxxab |
1tgo_A_431 | 1tgo | A | 431 | 442 | YDVAPQVGHKFC | EEE-TTT--EEE | bbbxabvlxbbx |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1jov_A_31 | 1jov | A | TMNTRIS(HYDROXYMETHYL)AMINOMETHANE | T - 32 |
1jov_A_31 | 1jov | A | TMNTRIS(HYDROXYMETHYL)AMINOMETHANE | S - 44 |
1jov_A_31 | 1jov | A | TMNTRIS(HYDROXYMETHYL)AMINOMETHANE | K - 46 |
1m2r_A_97 | 1m2r | A | MNY5,8-DI-AMINO-1,4-DIHYDROXY-ANTHRAQUINONE | F - 113 |
1m2r_A_97 | 1m2r | A | MNY5,8-DI-AMINO-1,4-DIHYDROXY-ANTHRAQUINONE | E - 114 |
1qfm_A_151 | 1qfm | A | GOLGLYCEROL | V - 151 |
1qfm_A_151 | 1qfm | A | GOLGLYCEROL | T - 152 |
1qfm_A_151 | 1qfm | A | CSWCYSTEINE-S-DIOXIDE | I - 153 |
1qfm_A_151 | 1qfm | A | GOLGLYCEROL | L - 168 |
1qfm_A_151 | 1qfm | A | GOLGLYCEROL | E - 169 |
1qfm_A_151 | 1qfm | A | GOLGLYCEROL | R - 170 |
1qfm_A_151 | 1qfm | A | GOLGLYCEROL | V - 171 |
Clusters included in this Subclass |
CLUSTER: HA.5.38 |