Logo
Information on SUBCLASS 5.8.1
Subclass Accession number: 6382
Subclass: 5.8.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 11

Average sequence ID (%) : 10.5 +/- 12.4
Average RMSD (Å) : 0.645 +/- 0.157

Consensus geometry
d (Å): 7 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: hXXpchpXX
(φψ)-conformation: bbapllpbb
Pattern: [aimvy][adstv][fgilmptv][aciklmt][eknpqst][dehkqrw][gkv][acgk][EHKQRTY]xxx
Conservation:0.770-0.439-0.668-0.432-0.300-0.5202.3221.1150.666-0.976-0.721-0.817
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1h8u_A_921h8u   A93104VALCTRGGYWRREEEETTTT-EEEbbbxabgvxxbx
1jov_A_311jov   A3344AKISLQGAQLISEEEETBTTEEEEbbbxaxvlbpab
1lur_A_10151lur   A10161027ATLLPFGATLAKEEEETBTTEEEEbbbbwxvlxxab
1m2r_A_971m2r   A100111IVRDQHSKTPSLEEE-TTT--EEEbbxpabNvxxbx
1n0u_A_3791n0u   A385396MVPTSDKGRFYAEEEBSSTT-EEEbbxbaxlvxbbx
1nsz_A_241nsz   A2536ISFTNLGARIVDEEEETBTTEEEEbbbbaxvlbxab
1o80_A_401o80   A4253IATMKKKGEKRCEEEESSTT-EEEbbbxaxUlxxbx
1pgu_A_4581pgu   A460471AVGLEEGNTIQVEEEETTTS-EEExbxxabvlxbbb
1qfm_A_1511qfm   A154165KFMKVDGAKELPEEEETTTTEEEEbbbxaxvlxxba
1snz_A_301snz   A3142VDIISWGCTITAEEEETBTTEEEEbbbbaxvlxxab
1tgo_A_4311tgo   A431442YDVAPQVGHKFCEEE-TTT--EEEbbbxabvlxbbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1jov_A_311jov   A     TMNTRIS(HYDROXYMETHYL)AMINOMETHANE T - 32
1jov_A_311jov   A     TMNTRIS(HYDROXYMETHYL)AMINOMETHANE S - 44
1jov_A_311jov   A     TMNTRIS(HYDROXYMETHYL)AMINOMETHANE K - 46
1m2r_A_971m2r   A     MNY5,8-DI-AMINO-1,4-DIHYDROXY-ANTHRAQUINONE F - 113
1m2r_A_971m2r   A     MNY5,8-DI-AMINO-1,4-DIHYDROXY-ANTHRAQUINONE E - 114
1qfm_A_1511qfm   A     GOLGLYCEROL V - 151
1qfm_A_1511qfm   A     GOLGLYCEROL T - 152
1qfm_A_1511qfm   A     CSWCYSTEINE-S-DIOXIDE I - 153
1qfm_A_1511qfm   A     GOLGLYCEROL L - 168
1qfm_A_1511qfm   A     GOLGLYCEROL E - 169
1qfm_A_1511qfm   A     GOLGLYCEROL R - 170
1qfm_A_1511qfm   A     GOLGLYCEROL V - 171

Clusters included in this Subclass
CLUSTER: HA.5.38