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Information on SUBCLASS 5.13.1
Subclass Accession number: 6390
Subclass: 5.13.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 11

Average sequence ID (%) : 19.5 +/- 19.4
Average RMSD (Å) : 0.964 +/- 0.311

Consensus geometry
d (Å): 9 delta (°): 135-180 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: pXGXXXXXX
(φψ)-conformation: bbeapppbb
Pattern: x[almv][qrt]x[DG][ADNQST]x[akt]xxx
Conservation:-0.7480.1240.422-0.5772.7730.023-0.4680.084-0.477-0.802-0.353
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1gtf_A_191gtf   A2333GLTRGADTRFHEEE-SSS--EExbxxeabbbxa
1ifr_A_4681ifr   A470480KRQNGDDPLLTEEEETTS--EEbbbbeaxwxbb
1juh_A_2831juh   A284294VVQIGDYAATEEEEETTS--EExbbbeaxxpbx
1juh_A_811juh   A8595WAQSGNETQQTEEEETTS--EEbbbbeaxxxbb
1mx1_A_15251mx1   A15261536YLQIGANTQAAEEEEESS-EEEbbxbeabbbxb
1pz7_A_1221pz7   A124134SLQVGNEAPITEEEETTS--EEbbbbeaxxpxb
1qba_*_1511qba   -151161YATSGDAKPKMEEE-TTS--EEbbbbeapxxbx
1r0u_A_621r0u   A6575VMRSGAVKMNQEEEEESSBEEEbbbbeabbbbx
1wap_A_191wap   A2333GLTRGTDTKFHEEE-SSS--EExbxxeaxbbxa
2fbj_H_1992fbj   H203213SVQHDSNPVQEEEEETTS--EEbbbxeaxpxbb
2kin_A_382kin   A3848TVVIGQGKPYVEEEETTS--EEbbbbeaxxxbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1gtf_A_191gtf   A     TRPTRYPTOPHAN V - 21
1gtf_A_191gtf   A     TRPTRYPTOPHAN I - 22
1gtf_A_191gtf   A     TRPTRYPTOPHAN G - 23
1gtf_A_191gtf   A     TRPTRYPTOPHAN L - 24
1gtf_A_191gtf   A     TRPTRYPTOPHAN T - 25
1gtf_A_191gtf   A     TRPTRYPTOPHAN R - 26
1gtf_A_191gtf   A     TRPTRYPTOPHAN G - 27
1gtf_A_191gtf   A     TRPTRYPTOPHAN A - 28
1gtf_A_191gtf   A     TRPTRYPTOPHAN D - 29
1gtf_A_191gtf   A     TRPTRYPTOPHAN T - 30
1gtf_A_191gtf   A     TRPTRYPTOPHAN R - 31
1gtf_A_191gtf   A     TRPTRYPTOPHAN H - 33
1gtf_A_191gtf   A     TRPTRYPTOPHAN H - 34
1gtf_A_191gtf   A     TRPTRYPTOPHAN S - 35
1gtf_A_191gtf   A     TRPTRYPTOPHAN E - 36
1ifr_A_4681ifr   A     GOLGLYCEROL Y - 481
1juh_A_811juh   A     NAGN-ACETYL-D-GLUCOSAMINE Q - 83
1juh_A_811juh   A     NAGN-ACETYL-D-GLUCOSAMINE W - 85
1juh_A_811juh   A     NAGN-ACETYL-D-GLUCOSAMINE G - 89
1juh_A_811juh   A     NAGN-ACETYL-D-GLUCOSAMINE N - 90
1juh_A_811juh   A     NAGN-ACETYL-D-GLUCOSAMINE V - 97
1juh_A_2831juh   A     EDO1,2-ETHANEDIOL L - 295
1r0u_A_621r0u   A     GOLGLYCEROL V - 65
1r0u_A_621r0u   A     GOLGLYCEROL R - 67
1r0u_A_621r0u   A     GOLGLYCEROL Q - 75
1r0u_A_621r0u   A     GOLGLYCEROL F - 77
1wap_A_191wap   A     LTRL-TRYPTOPHAN V - 21
1wap_A_191wap   A     LTRL-TRYPTOPHAN I - 22
1wap_A_191wap   A     LTRL-TRYPTOPHAN G - 23
1wap_A_191wap   A     LTRL-TRYPTOPHAN L - 24
1wap_A_191wap   A     LTRL-TRYPTOPHAN T - 25
1wap_A_191wap   A     LTRL-TRYPTOPHAN R - 26
1wap_A_191wap   A     LTRL-TRYPTOPHAN G - 27
1wap_A_191wap   A     LTRL-TRYPTOPHAN T - 28
1wap_A_191wap   A     LTRL-TRYPTOPHAN D - 29
1wap_A_191wap   A     LTRL-TRYPTOPHAN T - 30
1wap_A_191wap   A     LTRL-TRYPTOPHAN K - 31
1wap_A_191wap   A     LTRL-TRYPTOPHAN H - 33
1wap_A_191wap   A     LTRL-TRYPTOPHAN H - 34
1wap_A_191wap   A     LTRL-TRYPTOPHAN S - 35
1wap_A_191wap   A     LTRL-TRYPTOPHAN E - 36
2fbj_H_1992fbj   H     NAGN-ACETYL-D-GLUCOSAMINE S - 203
2fbj_H_1992fbj   H     NAGN-ACETYL-D-GLUCOSAMINE V - 204
2fbj_H_1992fbj   H     NAGN-ACETYL-D-GLUCOSAMINE Q - 205
2fbj_H_1992fbj   H     NAGN-ACETYL-D-GLUCOSAMINE V - 211
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gtf_A_191gtf   A AC1TRP BINDING SITE FOR CHAIN AG - 23
1gtf_A_191gtf   A AC2TRP BINDING SITE FOR CHAIN BT - 25
1gtf_A_191gtf   A AC2TRP BINDING SITE FOR CHAIN BT - 30

Clusters included in this Subclass
CLUSTER: HA.4.91
CLUSTER: HA.6.41