Information on SUBCLASS 5.35.1 |
Subclass Accession number: 6415
Subclass: 5.35.1 Type: HA beta-beta hairpin DB: ArchDB95 Image coordinates: Consensus coordinates: Conserved Annotation GO : GO:0003677 (>75 %) GO:0003700 (>50 %) GO:0003702 (>75 %) SCOP : 55944 (>75 %) 55945 (>75 %) 55946 (>75 %) |
Number of loops: 3 Average sequence ID (%) : 73.3 +/- -30.9 Average RMSD (Å) : 0.267 +/- 0.058 Consensus geometry
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Consensus Sequence: | YEPEXFPGh |
(φψ)-conformation: | bbaaababb |
Pattern: | [CNS] | x | [Y] | [E] | [P] | [E] | x | [F] | [P] | [G] | [LV] | [I] | [Y] | [R] | [MV] |
Conservation: | -1.387 | -1.636 | 1.106 | 0.209 | 1.106 | 0.209 | -1.425 | 0.658 | 1.106 | 0.658 | -0.907 | -0.240 | 1.106 | 0.209 | -0.773 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1ais_A_127 | 1ais | A | 127 | 141 | CEYEPEQFPGVIYRV | EE--TTT-SSEEEEE | bbbbaaababxxbxx |
1mp9_A_131 | 1mp9 | A | 131 | 145 | NMYEPEQFPGLIYRM | EE--TTT-SSEEEEE | bbbbaaababbbbxx |
1qna_A_141 | 1qna | A | 141 | 155 | SSYEPELFPGLIYRM | EE--TTT-SSEEEEE | bbbbaaabaxxxbxx |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1ais_A_127 | 1ais | A | 5IU5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE | R - 140 |
Clusters included in this Subclass |
CLUSTER: HA.7.129 |