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Information on SUBCLASS 5.42.1
Subclass Accession number: 6422
Subclass: 5.42.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0005501 (>50 %)  GO:0008289 (>75 %)  GO:0019840 (>50 %)  GO:0019841 (>50 %)  GO:0019842 (>50 %)  
SCOP : 50813 (>75 %)  50814 (>75 %)  50847 (>75 %)  
 Number of loops: 3

Average sequence ID (%) : 71.9 +/- -28.3
Average RMSD (Å) : 0.200 +/- 0.000

Consensus geometry
d (Å): 9 delta (°): 135-180 theta (°): 135-180 rho (°): 0-45
Consensus Sequence: QKGEXXNRG
(φψ)-conformation: bpeapplbe
Pattern: [L][TV][C][IV][Q][K][G][E][KV][EKP][N][R][G][W][KRT][HQ][W][IL][E]
Conservation:-0.353-0.9831.417-0.5280.0010.0010.3550.001-1.289-1.1800.3550.0010.3552.125-1.180-0.5222.125-0.7020.001
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ggl_A_931ggl   A93111LVCVQKGEVPNRGWRHWLEEEEEEESSSTT-EEEEEEExbbbxxeaxxvxebbbbbb
1kqw_A_921kqw   A93111LVCVQKGEKENRGWKQWIEEEEEEESSSTT-EEEEEEExbbbbxeaxxlbebbbbbb
1lpj_A_921lpj   A93111LTCIQKGEKKNRGWTHWIEEEEEEEESSSSEEEEEEEExbbbbxeaxxlbebbbbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1kqw_A_921kqw   A     RTLRETINOL W - 106
1kqw_A_921kqw   A     RTLRETINOL Q - 108
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1ggl_A_931ggl   A LBSRETINOL-BINDING SITEW - 106
1ggl_A_931ggl   A LBSRETINOL-BINDING SITEH - 108

Clusters included in this Subclass
CLUSTER: HA.5.174