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Information on SUBCLASS 5.45.1
Subclass Accession number: 6425
Subclass: 5.45.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0005507 (>75 %)  GO:0008471 (>75 %)  GO:0016679 (>75 %)  GO:0016682 (>75 %)  GO:0046914 (>75 %)  
SCOP : 49502 (>75 %)  49503 (>75 %)  49550 (>75 %)  
 Number of loops: 2

Average sequence ID (%) : 60.9 +/- 0.0
Average RMSD (Å) : 0.100 +/- 0.000

Consensus geometry
d (Å): 11 delta (°): 45-90 theta (°): 135-180 rho (°): 270-315
Consensus Sequence: VSPDGFXRp
(φψ)-conformation: bbaagppbp
Pattern: [AV][A][DS][L][TV][IV][AT][N][A][AP][V][S][P][D][G][F]x[R][DQ][A][IV][V][V]
Conservation:-1.2400.056-0.9160.056-1.078-0.268-1.0781.3530.056-1.0780.0560.0562.0021.3531.3531.353-1.8890.705-0.7540.056-0.2680.0560.056
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1gyc_A_51gyc   A527AASLVVANAPVSPDGFLRDAIVVEEEEEEEEEEE-TTS--EEEEEEbbbbxxbbbwbbaavbxbxbbbb
1kya_A_51kya   A527VADLTITNAAVSPDGFSRQAVVVEEEEEEEEEEE-TTS--EEEEEEbbbbxxbbbxbbaagxxbxbxbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1gyc_A_51gyc   A     NAGN-ACETYL-D-GLUCOSAMINE R - 22
1gyc_A_51gyc   A     NAGN-ACETYL-D-GLUCOSAMINE D - 23
1gyc_A_51gyc   A     NAGN-ACETYL-D-GLUCOSAMINE A - 24
1kya_A_51kya   A     PYETETRAHYDROPYRAN F - 20
1kya_A_51kya   A     NAGN-ACETYL-D-GLUCOSAMINE Q - 23
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gyc_A_51gyc   A NA1NAG BINDING SITE FOR CHAIN AD - 23

Clusters included in this Subclass
CLUSTER: HA.5.101