Information on SUBCLASS 6.2.2 |
Subclass Accession number: 6429
Subclass: 6.2.2 Type: HA beta-beta hairpin DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 17 Average sequence ID (%) : 15.5 +/- 17.8 Average RMSD (Å) : 0.753 +/- 0.314 Consensus geometry
|
Consensus Sequence: | hXpXXpcXXX |
(φψ)-conformation: | bbpaaalppa |
Pattern: | x | [aglmtv] | x | [acdgns] | x | x | [cdkst] | [fgkm] | x | x | x | x | x |
Conservation: | -0.549 | -0.337 | -0.046 | 1.541 | -0.198 | -1.051 | 2.094 | 1.202 | -0.766 | -0.782 | -0.977 | -0.257 | 0.126 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1ez0_A_8 | 1ez0 | A | 10 | 22 | YATNAFTGEALPL | EEE-TTTSSEEEE | bxbxaaavxxxxM |
1fxl_A_151 | 1fxl | A | 156 | 168 | ILVDQVTGVSRGV | EEE-TTT--EEEE | bxbpaIavxpavb |
1fxl_A_65 | 1fxl | A | 70 | 82 | LVRDKITGQSLGY | EEE-TTT--EEEE | xxbpaaavxpavb |
1g72_A_444 | 1g72 | A | 447 | 459 | RAFDLTTGKAKWT | EEE-TTT--EEEE | bxbxaaavxxabb |
1h2t_Z_66 | 1h2t | Z | 71 | 83 | MGLDKMKKTACGF | EEE-TTT-SEEEE | xxbxaaalbpagb |
1h2v_Z_66 | 1h2v | Z | 71 | 83 | MGLDKMKKTACGF | EEE-TTT--EEEE | xxbxaaavbpavb |
1hl9_A_407 | 1hl9 | A | 407 | 419 | TVRHFLTGERLSF | EEEETTT--EEEE | bbbxaaavxxbxb |
1l3k_A_131 | 1l3k | A | 136 | 148 | IMTDRGSGKKRGF | EEE-TTT--EEEE | xxbxaaavxxavb |
1l3k_A_40 | 1l3k | A | 45 | 57 | VMRDPNTKRSRGF | EEE-TTT--EEEE | xxbxaaavppavb |
1lvm_B_154 | 1lvm | B | 154 | 166 | PLVSTRDGFIVGI | EEEETTT--EEEE | xxbxaaavxxaeb |
1mda_H_94 | 1mda | H | 99 | 111 | EVFDPVTFLPIAD | EEE-TTT--EEEE | bbbxaaavxxabb |
1p27_B_99 | 1p27 | B | 104 | 116 | LNLDRRTGYLKGY | EEE-TTTSSEEEE | bxxxaaavxxxab |
1p5t_A_35 | 1p5t | A | 39 | 51 | LTLGAQSQILEPL | EEE-TTT-SEEEE | bbxxaaalbxbwa |
1pfv_A_141 | 1pfv | A | 142 | 154 | KGTCPKCKSPDQY | EEE-TTT--SSEE | bexpaaavxxlxb |
1pgs_*_62 | 1pgs | - | 66 | 78 | YVKNKTTGEWYEI | EEE-TTT--EEEE | bbxxaaavxxbxa |
1qni_A_163 | 1qni | A | 168 | 180 | TAIDAETMDVAWQ | EEEETTT-SEEEE | bbbxaaavbxabb |
1ri6_A_61 | 1ri6 | A | 65 | 77 | YRIAPDDGALTFA | EEE-TTT--EEEE | bxbxaaavpbbpa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1h2t_Z_66 | 1h2t | Z | 7MG7N-METHYL-8-HYDROGUANOSINE-5'-MONOPHOSPHATE | F - 83 |
1h2t_Z_66 | 1h2t | Z | 7MG7N-METHYL-8-HYDROGUANOSINE-5'-MONOPHOSPHATE | F - 85 |
1p5t_A_35 | 1p5t | A | MSESELENOMETHIONINE | K - 35 |
1pfv_A_141 | 1pfv | A | ZNZINC ION | C - 145 |
1pfv_A_141 | 1pfv | A | ZNZINC ION | P - 146 |
1pfv_A_141 | 1pfv | A | ZNZINC ION | K - 147 |
1pfv_A_141 | 1pfv | A | ZNZINC ION | C - 148 |
1pfv_A_141 | 1pfv | A | ZNZINC ION | K - 149 |
1pfv_A_141 | 1pfv | A | ZNZINC ION | S - 150 |
1pfv_A_141 | 1pfv | A | ZNZINC ION | Q - 153 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1h2t_Z_66 | 1h2t | Z | CAPM7GPPPG BINDING SITE FOR CHAIN Z | F - 83 |
Clusters included in this Subclass |
CLUSTER: HA.5.63 |
CLUSTER: HA.6.58 |
CLUSTER: HA.7.15 |