Logo
Information on SUBCLASS 4.2.3
Subclass Accession number: 643
Subclass: 4.2.3 PSSM
Type: HA beta-beta hairpin
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 13

Average sequence ID (%) : 15.6 +/- 16.7
Average RMSD (Å) : 0.515 +/- 0.157

Consensus geometry
d (Å): 5 delta (°): 135-180 theta (°): 135-180 rho (°): 45-90
Consensus Sequence: XXpcXpXh
(φψ)-conformation: bbaagpbb
Pattern: x[CFIVY]xx[adeknqs][DKNST][GQS]x[afiklv][FGILMVWY]x[afgilpy]x
Conservation:-0.2470.656-0.601-0.667-0.2501.5732.504-0.642-0.363-0.034-0.514-0.912-0.503
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a1x_*_771a1x   -7789RYMDNNSRLWQIQEEEETTS-EEEEEbbbxaavxbbxxa
1b34_A_141b34   A1628TIELKNGTQVHGTEEEETT--EEEEEbxxxaavpbbxbb
1ckm_A_2431ckm   A246258IIMSEDGTIGIFDEE-STT--EEEEExxabaavxxbbxb
1d3b_A_171d3b   A1931TCETNTGEVYRGKEEEETTS-EEEEEbbbxaavxbbbex
1d3b_B_161d3b   B1830RCILQDGRIFIGTEEEETT--EEEEEbbbxaavxbbbbx
1e4e_A_2861e4e   A293305MFLQDNGRIVLNEEEE-TT--EEEEEbbbxaavxxbxab
1fl2_A_3031fl2   A304316QIETASGAVLKAREEEETTS-EEEEEbbxbaagxbbbba
1hk9_A_221hk9   A2335SIYLVNGIKLQGQEEEETTS-EEEEEbbxxaavxbbbeb
1jsg_*_251jsg   -2537VYLDEKQHAWLPLEEEETT--EEEEEbbbbaavxxbbxa
1jsg_*_841jsg   -8495.YRSSDSSFWRLV.EEETTS-EEEEE.bbxaavxbbxxa
1kq1_A_211kq1   A2335TVFFLNGFQMKGVEEEETTS-EEEEEbxbxaavxbbbbb
1m5q_1_231m5q   12537QVVLSNGEVYKGVEEEETTS-EEEEEbbxbaavxbbbbx
1m6i_A_2421m6i   A242254MVKLNDGSQITYEEEEETTS-EEEEEbbbxaagpbbxba
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1d3b_A_171d3b   A     GOLGLYCEROL I - 17
1d3b_A_171d3b   A     GOLGLYCEROL V - 18
1d3b_A_171d3b   A     GOLGLYCEROL T - 19
1d3b_B_161d3b   B     CITCITRIC ACID I - 20
1d3b_B_161d3b   B     GOLGLYCEROL L - 21
1d3b_A_171d3b   A     GOLGLYCEROL T - 22
1d3b_B_161d3b   B     GOLGLYCEROL Q - 22
1d3b_A_171d3b   A     GOLGLYCEROL N - 23
1d3b_B_161d3b   B     GOLGLYCEROL D - 23
1d3b_A_171d3b   A     GOLGLYCEROL T - 24
1d3b_B_161d3b   B     GOLGLYCEROL G - 24
1d3b_B_161d3b   B     GOLGLYCEROL R - 25
1d3b_A_171d3b   A     GOLGLYCEROL E - 26
1d3b_A_171d3b   A     GOLGLYCEROL R - 29
1e4e_A_2861e4e   A     ADPADENOSINE-5'-DIPHOSPHATE R - 290
1e4e_A_2861e4e   A     PHY1(S)-AMINOETHYL-(2-CARBOXYPROPYL)PHOSPHORYL-PHOSPHINIC ACID R - 290
1e4e_A_2861e4e   A     MGMAGNESIUM ION R - 290
1e4e_A_2861e4e   A     ADPADENOSINE-5'-DIPHOSPHATE D - 292
1e4e_A_2861e4e   A     PHY1(S)-AMINOETHYL-(2-CARBOXYPROPYL)PHOSPHORYL-PHOSPHINIC ACID D - 292
1e4e_A_2861e4e   A     MGMAGNESIUM ION D - 292
1e4e_A_2861e4e   A     ADPADENOSINE-5'-DIPHOSPHATE F - 294
1e4e_A_2861e4e   A     ADPADENOSINE-5'-DIPHOSPHATE N - 304
1e4e_A_2861e4e   A     PHY1(S)-AMINOETHYL-(2-CARBOXYPROPYL)PHOSPHORYL-PHOSPHINIC ACID N - 304
1e4e_A_2861e4e   A     MGMAGNESIUM ION N - 304
1e4e_A_2861e4e   A     ADPADENOSINE-5'-DIPHOSPHATE E - 305
1e4e_A_2861e4e   A     PHY1(S)-AMINOETHYL-(2-CARBOXYPROPYL)PHOSPHORYL-PHOSPHINIC ACID E - 305
1e4e_A_2861e4e   A     MGMAGNESIUM ION E - 305
1e4e_A_2861e4e   A     MGMAGNESIUM ION V - 306
1e4e_A_2861e4e   A     ADPADENOSINE-5'-DIPHOSPHATE N - 307
1e4e_A_2861e4e   A     PHY1(S)-AMINOETHYL-(2-CARBOXYPROPYL)PHOSPHORYL-PHOSPHINIC ACID N - 307
1e4e_A_2861e4e   A     MGMAGNESIUM ION N - 307
1m5q_1_231m5q   1     MSESELENOMETHIONINE L - 28
1m5q_1_231m5q   1     GOLGLYCEROL N - 30
1m5q_1_231m5q   1     GOLGLYCEROL E - 32
1m5q_1_231m5q   1     GOLGLYCEROL Y - 34
1m5q_1_231m5q   1     CDCADMIUM ION H - 39
1m5q_1_231m5q   1     GOLGLYCEROL H - 39
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1e4e_A_2861e4e   A AC1PHY BINDING SITE FOR CHAIN AR - 290

Clusters included in this Subclass
CLUSTER: HA.3.57
CLUSTER: HA.4.41
CLUSTER: HA.5.108