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Information on SUBCLASS 6.23.1
Subclass Accession number: 6458
Subclass: 6.23.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 5

Average sequence ID (%) : 20.0 +/- 22.9
Average RMSD (Å) : 0.880 +/- 0.277

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: XXGppGppXh
(φψ)-conformation: bbeppgapbb
Pattern: [fi][AEGT]xx[CKLV][G][KQT][DERS][GP][DNS][hmq]xx[tvy][AIVY][FILY]
Conservation:-0.370-0.547-0.675-0.594-0.7333.1480.117-0.1731.1630.719-0.278-0.895-0.516-0.445-0.1120.190
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1c39_A_341c39   A3449FESTVGQSPDMYSYVFEEEEE--TT--EEEEEbbbbbebpwaxbbxbb
1dp7_P_551dp7   P5570RTRRLGTRGNSKYHYYEEEEESSTT--EEEEEbbbbbexpvaxbxbxx
1ntv_A_1251ntv   A126141FGYVCGKEGNHRFVAIEEEEESSTT--EEEEEbbbxbexpvaxbbbbb
2aaa_*_3932aaa   -394409IAMAKGTSGSQVITVLEEEEESSTTT-EEEEEbbbbbeppvapxbbbb
7taa_*_3937taa   -394409IAMRKGTDGSQIVTILEEEEESSTTS-EEEEEbbbbbeppgaxxbbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1c39_A_341c39   A     P3M1-3 SUGAR RING OF PENTAMANNOSYL 6-PHOSPHATE P - 42
1c39_A_341c39   A     P3M1-3 SUGAR RING OF PENTAMANNOSYL 6-PHOSPHATE D - 43
1c39_A_341c39   A     P3M1-3 SUGAR RING OF PENTAMANNOSYL 6-PHOSPHATE M - 44
1c39_A_341c39   A     P3M1-3 SUGAR RING OF PENTAMANNOSYL 6-PHOSPHATE Y - 45
1c39_A_341c39   A     P3M1-3 SUGAR RING OF PENTAMANNOSYL 6-PHOSPHATE Y - 47
1dp7_P_551dp7   P     PEGDI(HYDROXYETHYL)ETHER R - 55
1dp7_P_551dp7   P     EDO1,2-ETHANEDIOL T - 56
1dp7_P_551dp7   P     PEGDI(HYDROXYETHYL)ETHER T - 56
1dp7_P_551dp7   P     EDO1,2-ETHANEDIOL R - 57
1dp7_P_551dp7   P     EDO1,2-ETHANEDIOL R - 58
1dp7_P_551dp7   P     EDO1,2-ETHANEDIOL Y - 67
1ntv_A_1251ntv   A     PO4PHOSPHATE ION K - 142

Clusters included in this Subclass
CLUSTER: HA.5.112