ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 6.26.1

Subclass Accession number: 6461
Subclass: 6.26.1

PSSM

Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 4

Average sequence ID (%) : 21.2 +/- 22.8
Average RMSD (Å) : 0.700 +/- 0.424

Consensus geometry

d (Å): 5

delta (°): 90-135

theta (°): 135-180

rho (°): 315-360

Consensus Sequence:	hphhppphXX
(φψ)-conformation:	bppeapapbb

Pattern:	x	x	[EKNR]	[GL]	[AG]	[DKS]	[ST]	[DEGS]	[LW]	x	x
Conservation:	-1.000	-1.250	0.165	-0.757	1.790	-0.055	1.331	-0.349	0.597	-1.121	-0.350

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1ejx_C_1020	1ejx	C	1020	1030	KVRLADTELWI	EEE-TTSS-EE	bbxxeaxaxbb
1exb_A_39	1exb	A	39	49	YRNLGKSGLRV	EEESTTSS-EE	bbxxeaxaxxb
1pyf_A_4	1pyf	A	4	13	.AKLGKSDLQV	.EE-TTS--EE	.bxxeaxaxbb
4bcl_*_10	4bcl	-	18	28	ILEGGSSSWGQ	EE--TT---EE	bxxbeaxaxbx

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1pyf_A_4	1pyf	A	EGLETHYLENE GLYCOL	K - 5
1pyf_A_4	1pyf	A	MSESELENOMETHIONINE	L - 6
1pyf_A_4	1pyf	A	EGLETHYLENE GLYCOL	L - 6
1pyf_A_4	1pyf	A	EGLETHYLENE GLYCOL	G - 7
1pyf_A_4	1pyf	A	EGLETHYLENE GLYCOL	K - 8
1pyf_A_4	1pyf	A	MSESELENOMETHIONINE	V - 13
4bcl_*_10	4bcl	*	BCLBACTERIOCHLOROPHYLL A	A - 11
4bcl_*_10	4bcl	*	BCLBACTERIOCHLOROPHYLL A	H - 12
4bcl_*_10	4bcl	*	BCLBACTERIOCHLOROPHYLL A	S - 13
4bcl_*_10	4bcl	*	BCLBACTERIOCHLOROPHYLL A	Y - 15
4bcl_*_10	4bcl	*	BCLBACTERIOCHLOROPHYLL A	E - 16
4bcl_*_10	4bcl	*	BCLBACTERIOCHLOROPHYLL A	I - 17
4bcl_*_10	4bcl	*	BCLBACTERIOCHLOROPHYLL A	V - 29
4bcl_*_10	4bcl	*	BCLBACTERIOCHLOROPHYLL A	K - 30
4bcl_*_10	4bcl	*	BCLBACTERIOCHLOROPHYLL A	G - 31
4bcl_*_10	4bcl	*	BCLBACTERIOCHLOROPHYLL A	R - 32
4bcl_*_10	4bcl	*	BCLBACTERIOCHLOROPHYLL A	A - 33
4bcl_*_10	4bcl	*	BCLBACTERIOCHLOROPHYLL A	V - 35

Clusters included in this Subclass

CLUSTER: HA.5.245

CLUSTER: HA.6.167