Information on SUBCLASS 6.30.1 |
Subclass Accession number: 6465
Subclass: 6.30.1 Type: HA beta-beta hairpin DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 3 Average sequence ID (%) : 13.3 +/- 13.6 Average RMSD (Å) : 0.633 +/- 0.115 Consensus geometry
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Consensus Sequence: | XXhXXGpXXh |
(φψ)-conformation: | bbpabeppbb |
Pattern: | x | [AFV] | x | [HI] | [DRW] | [AFP] | [DP] | x | [G] | [DTY] | [DPS] | x | [FVY] | [LVY] | [AN] |
Conservation: | -0.730 | -0.359 | -0.730 | -0.074 | -0.656 | -0.730 | 1.203 | -0.656 | 3.059 | -0.507 | 0.013 | -0.359 | 0.458 | 0.013 | 0.057 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1gmi_A_78 | 1gmi | A | 82 | 96 | AVFHDAPIGYDDFVA | EEEE--SSSS-EEEE | bxbbxxabexxxxab |
1i2s_A_243 | 1i2s | A | 247 | 261 | IAIIWPPKGDPVVLA | EEEEE-SSS--EEEE | bbbbbxabexxbbbb |
1ule_A_99 | 1ule | A | 99 | 113 | RFQIRFDYGTSIYYN | EEEEE-SSS--EEEE | bbbbbbabexxbbbx |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1gmi_A_78 | 1gmi | A | MGMAGNESIUM ION | D - 86 |
1gmi_A_78 | 1gmi | A | MGMAGNESIUM ION | A - 87 |
1gmi_A_78 | 1gmi | A | MGMAGNESIUM ION | P - 88 |
1gmi_A_78 | 1gmi | A | MGMAGNESIUM ION | G - 90 |
1gmi_A_78 | 1gmi | A | MGMAGNESIUM ION | D - 92 |
1i2s_A_243 | 1i2s | A | CITCITRIC ACID | R - 244 |
1i2s_A_243 | 1i2s | A | CITCITRIC ACID | N - 245 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1gmi_A_78 | 1gmi | A | AC1MG BINDING SITE FOR CHAIN A | D - 86 |
Clusters included in this Subclass |
CLUSTER: HA.6.199 |