Home

Classification

Query

Statistics

Contact

Links

Help

PDB code:

Information on SUBCLASS 4.2.7

Subclass Accession number: 647 Subclass: 4.2.7 Type: HA beta-beta hairpin DB: ArchDB40 Image coordinates: Consensus coordinates:

Number of loops: 5 Average sequence ID (%) : 10.0 +/- 11.6 Average RMSD (Å) : 0.640 +/- 0.261 Consensus geometry d (Å): 5 delta (°): 135-180 theta (°): 135-180 rho (°): 0-45

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1a1x_*_77	1a1x	-	77	89	RYMDNNSRLWQIQ	EEEETTS-EEEEE	bbbxaavxbbxxa
1gso_A_267	1gso	A	274	286	LMIDKQGNPKVIE	EEEETT--EEEEE	bbxxaavxxbxab
1jpm_A_25	1jpm	A	35	47	RITYDSGAVGWGE	EEEETTS-EEEEE	bbbbaagxbbbbb
1k3x_A_53	1k3x	A	55	67	LTHFSNDLTLYSH	EEEETTS-EEEEE	bxxbaavxbxxbb
1oh0_A_96	1oh0	A	105	117	MRFDEHGRIQTMQ	EEE-TTS-EEEEE	bbbxaavbxabbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1jpm_A_25	1jpm	A	GOLGLYCEROL	G - 41
1jpm_A_25	1jpm	A	GOLGLYCEROL	A - 42
1jpm_A_25	1jpm	A	GOLGLYCEROL	V - 43
1jpm_A_25	1jpm	A	GOLGLYCEROL	G - 44
1jpm_A_25	1jpm	A	GOLGLYCEROL	W - 45
1oh0_A_96	1oh0	A	EQUEQUILENIN	L - 99
1oh0_A_96	1oh0	A	EQUEQUILENIN	V - 101
1oh0_A_96	1oh0	A	EQUEQUILENIN	D - 103
1oh0_A_96	1oh0	A	EQUEQUILENIN	M - 105
1oh0_A_96	1oh0	A	EQUEQUILENIN	M - 116
1oh0_A_96	1oh0	A	EQUEQUILENIN	A - 118

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1oh0_A_96	1oh0	A	AC1EQU BINDING SITE FOR CHAIN A	D - 103
1oh0_A_96	1oh0	A	AC1EQU BINDING SITE FOR CHAIN A	M - 116

Clusters included in this Subclass

CLUSTER: HA.3.152

CLUSTER: HA.5.91

For any comment or web-related incidence, send an email to the webmaster.