Logo
Information on SUBCLASS 8.4.1
Subclass Accession number: 6519
Subclass: 8.4.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 9

Average sequence ID (%) : 49.9 +/- 28.8
Average RMSD (Å) : 0.789 +/- 0.285

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: hCphPGHhXhhX
(φψ)-conformation: bbappgaaaabb
Pattern: [ny][agly][fy][fiv][c][qst][fiy][p][g][h][acfiwy][ags][aglmt][gm][kmqr][fgk][gitv][akltv][iklt][ltv]
Conservation:0.334-0.9220.816-0.1812.233-0.2490.1961.5391.1921.886-0.729-0.643-0.823-0.417-0.393-0.789-0.811-0.773-0.768-0.698
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1azc_A_1081azc   A108127YAYFCSFPGHWAMMKGTLKLEEEE--STTTTTTSEEEEEEbbbbbaxpvaaaabbbbbbx
1cuo_A_1081cuo   A108127YTYFCSYPGHFSMMRGTLKLEEEE--STT-TTTSEEEEEEbbbbxappvaaaaxbbbbbx
1dyz_A_1081dyz   A108127YAYFCSFPGHWAMMKGTLKLEEEE--STTGGGTSEEEEEEbbbbxaxpvaaaabbbbbbx
1e30_A_1321e30   A134153YYYVCQIPGHAATGQFGKIVEEEE--STTTTTTT-EEEEEbbbbxaxpvaaaagxbbbbb
1f56_A_681f56   A7089NYFICSFPGHCGGGMKIAINEEEE--STTTTTTT-EEEEEbbbbbaxpvaaaagxbbbbx
1joi_*_1081joi   -108127YAFFCSFPGHISMMKGTVTVEEEE--STTGGGTSEEEEEEbbbbbaxpvaaaabbbbbbx
1nwp_A_1081nwp   A108127YGFFCSFPGHISMMKGTVTLEEEE--STT-GGGSEEEEEEbbbbbaxpvaaaabbbbbbx
1qhq_A_1161qhq   A118137YLYICTFPGHYLAGMKGTLTEEEE--STTTTTTT-EEEEEbxbbbaxpgaaaagxbbbxb
1rkr_A_1081rkr   A108127YAYFCSFPGHFALMKGVLKLEEEE--STTGGGTSEEEEEEbbbbbaxpvaaaaxbbbbbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1azc_A_1081azc   A     CUCOPPER (II) ION C - 112
1azc_A_1081azc   A     CUCOPPER (II) ION S - 113
1azc_A_1081azc   A     CUCOPPER (II) ION F - 114
1azc_A_1081azc   A     CUCOPPER (II) ION H - 117
1azc_A_1081azc   A     CUCOPPER (II) ION M - 121
1cuo_A_1081cuo   A     CUCOPPER (II) ION Y - 114
1e30_A_1321e30   A     CUCOPPER (II) ION C - 138
1e30_A_1321e30   A     CUCOPPER (II) ION Q - 139
1e30_A_1321e30   A     CUCOPPER (II) ION I - 140
1e30_A_1321e30   A     CUCOPPER (II) ION H - 143
1e30_A_1321e30   A     CUCOPPER (II) ION A - 144
1e30_A_1321e30   A     CUCOPPER (II) ION Q - 148
1f56_A_681f56   A     CU1COPPER (I) ION C - 74
1f56_A_681f56   A     CU1COPPER (I) ION S - 75
1f56_A_681f56   A     CU1COPPER (I) ION F - 76
1f56_A_681f56   A     CU1COPPER (I) ION H - 79
1f56_A_681f56   A     CU1COPPER (I) ION M - 84
1qhq_A_1161qhq   A     CUCOPPER (II) ION C - 122
1qhq_A_1161qhq   A     CUCOPPER (II) ION T - 123
1qhq_A_1161qhq   A     CUCOPPER (II) ION F - 124
1qhq_A_1161qhq   A     CUCOPPER (II) ION H - 127
1qhq_A_1161qhq   A     CUCOPPER (II) ION M - 132
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1dyz_A_1081dyz   A CU1TYPE 1 COPPER SITEC - 112
1dyz_A_1081dyz   A CU1TYPE 1 COPPER SITEH - 117
1dyz_A_1081dyz   A CU1TYPE 1 COPPER SITEM - 121
1e30_A_1321e30   A CUACU SITE CHAIN AC - 138
1e30_A_1321e30   A CUACU SITE CHAIN AH - 143
1e30_A_1321e30   A CUACU SITE CHAIN AQ - 148
1qhq_A_1161qhq   A CUTYPE I BLUE COPPER SITEC - 122
1qhq_A_1161qhq   A CUTYPE I BLUE COPPER SITEH - 127
1qhq_A_1161qhq   A CUTYPE I BLUE COPPER SITEM - 132

Clusters included in this Subclass
CLUSTER: HA.10.6