Information on SUBCLASS 8.8.1 |
Subclass Accession number: 6524
Subclass: 8.8.1 Type: HA beta-beta hairpin DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 8 Average sequence ID (%) : 25.2 +/- 22.3 Average RMSD (Å) : 0.650 +/- 0.200 Consensus geometry
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Consensus Sequence: | phpGXppppcXh |
(φψ)-conformation: | bppgbpaaapbb |
Pattern: | [EKR] | [FILVY] | [kry] | [ILVY] | [HKRW] | [FILVW] | [dkq] | [GN] | [DSTWY] | [DNPS] | [DEHNQ] | [grst] | [EHNY] | [ADN] | [fity] | [LW] | x |
Conservation: | 0.863 | -0.138 | -0.665 | -0.063 | -0.011 | -0.298 | -0.758 | 2.104 | -0.545 | -0.095 | 0.220 | -1.051 | -0.201 | 0.498 | -0.666 | 2.299 | -1.492 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1kna_A_38 | 1kna | A | 40 | 56 | EYYLKWKGYPETENTWE | EEEEEETTS-GGG-EEE | bbxbbxxvbxaaapbxb |
1oi1_A_92 | 1oi1 | A | 92 | 108 | RLRLRLDGSDNRNDFWR | EEEEEETTS-TT--EEE | bbxbbxpvbxaaaxbbb |
1oz2_A_267 | 1oz2 | A | 267 | 283 | RLRLHFDGYSECHDFWV | EEEEEETTS-GGG-EEE | bbxbbxpvbxaaapbbb |
1oz2_A_374 | 1oz2 | A | 374 | 390 | RFLVHFDNWDDTYDYWC | EEEEEETTS-GGG-EEE | bbbxbxpvbpaaaxbxb |
1oz2_A_478 | 1oz2 | A | 478 | 494 | RIKIHFDGWSHGYDFWI | EEEEEETTB-GGG-EEE | bbbxbxpvxpaaaxbxb |
1pfb_A_40 | 1pfb | A | 42 | 58 | EYRVKWKGWNQRYNTWE | EEEEEETTS-GGG-EEE | bbxbxxxvbpaaapbxb |
1qfm_A_209 | 1qfm | A | 209 | 225 | KLYYHVLGTDQSEDILC | EEEEEETTS-GGG-EEE | bbbbbxpvbxaaapxxa |
1qg3_A_1156 | 1qg3 | A | 1158 | 1174 | RVKYWIQGDSESEAHLL | EEEEEETTS-GGG-EEE | bbbbbxpgxxaaaxbbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Clusters included in this Subclass |
CLUSTER: HA.7.27 |