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Information on SUBCLASS 8.8.1
Subclass Accession number: 6524
Subclass: 8.8.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 8

Average sequence ID (%) : 25.2 +/- 22.3
Average RMSD (Å) : 0.650 +/- 0.200

Consensus geometry
d (Å): 9 delta (°): 135-180 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: phpGXppppcXh
(φψ)-conformation: bppgbpaaapbb
Pattern: [EKR][FILVY][kry][ILVY][HKRW][FILVW][dkq][GN][DSTWY][DNPS][DEHNQ][grst][EHNY][ADN][fity][LW]x
Conservation:0.863-0.138-0.665-0.063-0.011-0.298-0.7582.104-0.545-0.0950.220-1.051-0.2010.498-0.6662.299-1.492
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1kna_A_381kna   A4056EYYLKWKGYPETENTWEEEEEEETTS-GGG-EEEbbxbbxxvbxaaapbxb
1oi1_A_921oi1   A92108RLRLRLDGSDNRNDFWREEEEEETTS-TT--EEEbbxbbxpvbxaaaxbbb
1oz2_A_2671oz2   A267283RLRLHFDGYSECHDFWVEEEEEETTS-GGG-EEEbbxbbxpvbxaaapbbb
1oz2_A_3741oz2   A374390RFLVHFDNWDDTYDYWCEEEEEETTS-GGG-EEEbbbxbxpvbpaaaxbxb
1oz2_A_4781oz2   A478494RIKIHFDGWSHGYDFWIEEEEEETTB-GGG-EEEbbbxbxpvxpaaaxbxb
1pfb_A_401pfb   A4258EYRVKWKGWNQRYNTWEEEEEEETTS-GGG-EEEbbxbxxxvbpaaapbxb
1qfm_A_2091qfm   A209225KLYYHVLGTDQSEDILCEEEEEETTS-GGG-EEEbbbbbxpvbxaaapxxa
1qg3_A_11561qg3   A11581174RVKYWIQGDSESEAHLLEEEEEETTS-GGG-EEEbbbbbxpgxxaaaxbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1kna_A_381kna   A     MLYN-DIMETHYL-LYSINE W - 45
1kna_A_381kna   A     MLYN-DIMETHYL-LYSINE Y - 48
1kna_A_381kna   A     MLYN-DIMETHYL-LYSINE E - 52
1kna_A_381kna   A     MLYN-DIMETHYL-LYSINE T - 54
1kna_A_381kna   A     MLYN-DIMETHYL-LYSINE E - 56
1oz2_A_3741oz2   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID N - 381
1oz2_A_3741oz2   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID W - 382
1oz2_A_3741oz2   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID D - 383
1oz2_A_3741oz2   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID T - 385
1oz2_A_3741oz2   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID Y - 386
1oz2_A_4781oz2   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID K - 480
1oz2_A_4781oz2   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID F - 483
1oz2_A_4781oz2   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID W - 486
1oz2_A_4781oz2   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID Y - 490
1pfb_A_401pfb   A     M3LN-TRIMETHYLLYSINE W - 47
1pfb_A_401pfb   A     M3LN-TRIMETHYLLYSINE K - 48
1pfb_A_401pfb   A     M3LN-TRIMETHYLLYSINE W - 50
1pfb_A_401pfb   A     M3LN-TRIMETHYLLYSINE Y - 54
1pfb_A_401pfb   A     M3LN-TRIMETHYLLYSINE T - 56
1pfb_A_401pfb   A     M3LN-TRIMETHYLLYSINE E - 58
1qfm_A_2091qfm   A     GOLGLYCEROL C - 225
1qfm_A_2091qfm   A     GOLGLYCEROL A - 226

Clusters included in this Subclass
CLUSTER: HA.7.27