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Information on SUBCLASS 8.9.1
Subclass Accession number: 6525
Subclass: 8.9.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 7

Average sequence ID (%) : 78.3 +/- 13.0
Average RMSD (Å) : 0.514 +/- 0.291

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 135-180 rho (°): 0-45
Consensus Sequence: AhSRPGXGEPXh
(φψ)-conformation: bbpbplaeppbb
Pattern: [H][S][LM][QR][Y][F][HVY][T][AS][MV][S][R][P][G]x[G][E][P][RW][FY][IM][aest][V][G][Y]
Conservation:1.690-0.209-0.581-0.6411.2150.741-1.2150.266-0.885-0.817-0.2090.2661.2150.741-1.8490.7410.2661.215-1.0620.130-0.819-1.947-0.2090.7411.215
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a1n_A_31a1n   A327HSMRYFYTAMSRPGRGEPRFIAVGYEEEEEEEEEE--TTS-S-EEEEEEEbbbbbbbbbbxbpvaexpxbbbbbb
1k5n_A_31k5n   A327HSMRYFHTSVSRPGRGEPRFITVGYEEEEEEEEEE--TTSSS-EEEEEEEbbbbbbbbbbxbpvaexpxbbbbbb
1k8d_A_31k8d   A327HSLQYFHTAVSRPGLGEPWFISVGYEEEEEEEEEE--TTS-S-EEEEEEEbbbbbbbbbbxbpvaexpxbbbbbb
1lk2_A_31lk2   A327HSLRYFVTAVSRPGLGEPRYMEVGYEEEEEEEEEE--TTSSS-EEEEEEEbbbbbbbbbbxbpvaexpxbbbbbb
1m6o_A_31m6o   A327HSMRYFYTAMSRPGRGEPRFITVGYEEEEEEEEEE--TTSSS-EEEEEEEbbbbbbbbbbxbpvaexpxbbbbbb
1qo3_A_31qo3   A327HSLRYFVTAVSRPGFGEPRYMEVGYEEEEEEEEEE--TTSSS-EEEEEEEbbbbbbbbbbxbpvaexpxbbbbxb
1r3h_A_10031r3h   A10031027HSLRYFYTAVSRPGLGEPWFIIVGYEEEEEEEEEE--TTSS--EEEEEEEbbbbbbbbbbxbplaebxbbbbbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1k5n_A_31k5n   A     GOLGLYCEROL S - 4
1k5n_A_31k5n   A     GOLGLYCEROL R - 6
1k5n_A_31k5n   A     GOLGLYCEROL F - 8
1k5n_A_31k5n   A     GOLGLYCEROL Y - 27
1lk2_A_31lk2   A     MPD2-METHYL-2,4-PENTANEDIOL T - 10
1lk2_A_31lk2   A     MPD2-METHYL-2,4-PENTANEDIOL A - 11
1lk2_A_31lk2   A     PO4PHOSPHATE ION V - 12
1lk2_A_31lk2   A     MPD2-METHYL-2,4-PENTANEDIOL V - 12
1lk2_A_31lk2   A     PO4PHOSPHATE ION R - 14
1lk2_A_31lk2   A     PO4PHOSPHATE ION P - 20
1lk2_A_31lk2   A     PO4PHOSPHATE ION R - 21
1lk2_A_31lk2   A     MPD2-METHYL-2,4-PENTANEDIOL R - 21
1lk2_A_31lk2   A     MPD2-METHYL-2,4-PENTANEDIOL Y - 22
1lk2_A_31lk2   A     MPD2-METHYL-2,4-PENTANEDIOL M - 23

Clusters included in this Subclass
CLUSTER: HA.7.35