Information on SUBCLASS 8.9.1 |
Subclass Accession number: 6525
Subclass: 8.9.1 Type: HA beta-beta hairpin DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 7 Average sequence ID (%) : 78.3 +/- 13.0 Average RMSD (Å) : 0.514 +/- 0.291 Consensus geometry
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Consensus Sequence: | AhSRPGXGEPXh |
(φψ)-conformation: | bbpbplaeppbb |
Pattern: | [H] | [S] | [LM] | [QR] | [Y] | [F] | [HVY] | [T] | [AS] | [MV] | [S] | [R] | [P] | [G] | x | [G] | [E] | [P] | [RW] | [FY] | [IM] | [aest] | [V] | [G] | [Y] |
Conservation: | 1.690 | -0.209 | -0.581 | -0.641 | 1.215 | 0.741 | -1.215 | 0.266 | -0.885 | -0.817 | -0.209 | 0.266 | 1.215 | 0.741 | -1.849 | 0.741 | 0.266 | 1.215 | -1.062 | 0.130 | -0.819 | -1.947 | -0.209 | 0.741 | 1.215 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1a1n_A_3 | 1a1n | A | 3 | 27 | HSMRYFYTAMSRPGRGEPRFIAVGY | EEEEEEEEEE--TTS-S-EEEEEEE | bbbbbbbbbbxbpvaexpxbbbbbb |
1k5n_A_3 | 1k5n | A | 3 | 27 | HSMRYFHTSVSRPGRGEPRFITVGY | EEEEEEEEEE--TTSSS-EEEEEEE | bbbbbbbbbbxbpvaexpxbbbbbb |
1k8d_A_3 | 1k8d | A | 3 | 27 | HSLQYFHTAVSRPGLGEPWFISVGY | EEEEEEEEEE--TTS-S-EEEEEEE | bbbbbbbbbbxbpvaexpxbbbbbb |
1lk2_A_3 | 1lk2 | A | 3 | 27 | HSLRYFVTAVSRPGLGEPRYMEVGY | EEEEEEEEEE--TTSSS-EEEEEEE | bbbbbbbbbbxbpvaexpxbbbbbb |
1m6o_A_3 | 1m6o | A | 3 | 27 | HSMRYFYTAMSRPGRGEPRFITVGY | EEEEEEEEEE--TTSSS-EEEEEEE | bbbbbbbbbbxbpvaexpxbbbbbb |
1qo3_A_3 | 1qo3 | A | 3 | 27 | HSLRYFVTAVSRPGFGEPRYMEVGY | EEEEEEEEEE--TTSSS-EEEEEEE | bbbbbbbbbbxbpvaexpxbbbbxb |
1r3h_A_1003 | 1r3h | A | 1003 | 1027 | HSLRYFYTAVSRPGLGEPWFIIVGY | EEEEEEEEEE--TTSS--EEEEEEE | bbbbbbbbbbxbplaebxbbbbbbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1k5n_A_3 | 1k5n | A | GOLGLYCEROL | S - 4 |
1k5n_A_3 | 1k5n | A | GOLGLYCEROL | R - 6 |
1k5n_A_3 | 1k5n | A | GOLGLYCEROL | F - 8 |
1k5n_A_3 | 1k5n | A | GOLGLYCEROL | Y - 27 |
1lk2_A_3 | 1lk2 | A | MPD2-METHYL-2,4-PENTANEDIOL | T - 10 |
1lk2_A_3 | 1lk2 | A | MPD2-METHYL-2,4-PENTANEDIOL | A - 11 |
1lk2_A_3 | 1lk2 | A | PO4PHOSPHATE ION | V - 12 |
1lk2_A_3 | 1lk2 | A | MPD2-METHYL-2,4-PENTANEDIOL | V - 12 |
1lk2_A_3 | 1lk2 | A | PO4PHOSPHATE ION | R - 14 |
1lk2_A_3 | 1lk2 | A | PO4PHOSPHATE ION | P - 20 |
1lk2_A_3 | 1lk2 | A | PO4PHOSPHATE ION | R - 21 |
1lk2_A_3 | 1lk2 | A | MPD2-METHYL-2,4-PENTANEDIOL | R - 21 |
1lk2_A_3 | 1lk2 | A | MPD2-METHYL-2,4-PENTANEDIOL | Y - 22 |
1lk2_A_3 | 1lk2 | A | MPD2-METHYL-2,4-PENTANEDIOL | M - 23 |
Clusters included in this Subclass |
CLUSTER: HA.7.35 |