Logo
Information on SUBCLASS 8.13.1
Subclass Accession number: 6529
Subclass: 8.13.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0004672 (>50 %)  GO:0016301 (>50 %)  GO:0016773 (>50 %)  
SCOP : 56111 (>50 %)  56112 (>50 %)  88854 (>50 %)  
Number of loops: 5

Average sequence ID (%) : 20.0 +/- 29.8
Average RMSD (Å) : 1.480 +/- 0.295

Consensus geometry
d (Å): 5 delta (°): 45-90 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: hXXhXpXcXhXp
(φψ)-conformation: bbppabplppbb
Pattern: [FIK][LVW]x[EGPS][AP][AKT][qrt][EPQ][GN]x[lpt]x[DHQ][FIV][ERT][LTV]
Conservation:-0.6880.247-1.070-0.5961.796-0.025-0.5480.5772.078-1.027-1.136-1.2120.6400.7140.0300.220
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1aye_*_361aye   -3752FWKSPTTPGETAHVRVEEE---STT--EEEEExabxxabpvxxbbbxb
1fl2_A_2901fl2   A292307KLIPAAVEGGLHQIETEEE--SSTT--EEEEEbbbxpabpvxxxbbxb
1hyu_A_2901hyu   A292307KLVPAATEGGLHQIETEEE--SSTTS-EEEEEbbbxpabxvxbxbbxb
1pca_*_361pca   -3752FWRGPARPGFPIDVRVEEE---STTS-EEEEExabxpabpvxwbxbxb
1sx5_A_621sx5   A6277IVEEPKQQNHYPDFTLEEE--SSTT-B-SEEExbbbpabxvbxwabbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1fl2_A_2901fl2   A     FADFLAVIN-ADENINE DINUCLEOTIDE A - 290
1fl2_A_2901fl2   A     FADFLAVIN-ADENINE DINUCLEOTIDE S - 291
1sx5_A_621sx5   A     MNMANGANESE (II) ION Q - 68
1sx5_A_621sx5   A     MNMANGANESE (II) ION H - 71
1sx5_A_621sx5   A     MNMANGANESE (II) ION D - 74

Clusters included in this Subclass
CLUSTER: HA.9.33