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Information on SUBCLASS 8.20.1
Subclass Accession number: 6536
Subclass: 8.20.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 3

Average sequence ID (%) : 11.9 +/- 13.6
Average RMSD (Å) : 1.067 +/- 0.153

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: XXhhXpcXppXX
(φψ)-conformation: bbpabplpapbb
Pattern: [LMV][GSV][CKL][CIP][CFP][AE][EQ][DG][CNS][NS][EST]xx[SWY]
Conservation:0.696-1.204-0.980-0.980-1.2040.2421.9981.243-0.1981.244-0.086-0.262-0.6450.137
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1f0l_A_1331f0l   A136149LSLPFAEGSSSVEYEEEE--TT---EEExbbpabxvbaxbbb
1rmd_*_881rmd   -88101MVKCPAQDCNEEVSEEE--STT---EEExbxxaxpvxabbbx
1v54_F_551v54   F5871VGCICEEDNSTVIWEEE--STT-S--EEbbbxabpvxaxbxb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1f0l_A_1331f0l   A     APUADENYLYL-3'-5'-PHOSPHO-URIDINE-3'-MONOPHOSPHATE E - 148
1rmd_*_881rmd   *     ZNZINC ION C - 91
1rmd_*_881rmd   *     ZNZINC ION P - 92
1rmd_*_881rmd   *     ZNZINC ION A - 93
1rmd_*_881rmd   *     ZNZINC ION C - 96
1rmd_*_881rmd   *     ZNZINC ION N - 97
1rmd_*_881rmd   *     ZNZINC ION E - 98
1v54_F_551v54   F     ZNZINC ION C - 60
1v54_F_551v54   F     ZNZINC ION I - 61
1v54_F_551v54   F     ZNZINC ION C - 62
1v54_F_551v54   F     ZNZINC ION E - 63
1v54_F_551v54   F     ZNZINC ION I - 70
1v54_F_551v54   F     ZNZINC ION F - 72
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1f0l_A_1331f0l   A CATREFERS TO CATALYTIC SITEE - 148

Clusters included in this Subclass
CLUSTER: HA.8.76