Information on SUBCLASS 8.20.1 |
Subclass Accession number: 6536
Subclass: 8.20.1 Type: HA beta-beta hairpin DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 3 Average sequence ID (%) : 11.9 +/- 13.6 Average RMSD (Å) : 1.067 +/- 0.153 Consensus geometry
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Consensus Sequence: | XXhhXpcXppXX |
(φψ)-conformation: | bbpabplpapbb |
Pattern: | [LMV] | [GSV] | [CKL] | [CIP] | [CFP] | [AE] | [EQ] | [DG] | [CNS] | [NS] | [EST] | x | x | [SWY] |
Conservation: | 0.696 | -1.204 | -0.980 | -0.980 | -1.204 | 0.242 | 1.998 | 1.243 | -0.198 | 1.244 | -0.086 | -0.262 | -0.645 | 0.137 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1f0l_A_133 | 1f0l | A | 136 | 149 | LSLPFAEGSSSVEY | EEEE--TT---EEE | xbbpabxvbaxbbb |
1rmd_*_88 | 1rmd | - | 88 | 101 | MVKCPAQDCNEEVS | EEE--STT---EEE | xbxxaxpvxabbbx |
1v54_F_55 | 1v54 | F | 58 | 71 | VGCICEEDNSTVIW | EEE--STT-S--EE | bbbxabpvxaxbxb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1f0l_A_133 | 1f0l | A | APUADENYLYL-3'-5'-PHOSPHO-URIDINE-3'-MONOPHOSPHATE | E - 148 |
1rmd_*_88 | 1rmd | * | ZNZINC ION | C - 91 |
1rmd_*_88 | 1rmd | * | ZNZINC ION | P - 92 |
1rmd_*_88 | 1rmd | * | ZNZINC ION | A - 93 |
1rmd_*_88 | 1rmd | * | ZNZINC ION | C - 96 |
1rmd_*_88 | 1rmd | * | ZNZINC ION | N - 97 |
1rmd_*_88 | 1rmd | * | ZNZINC ION | E - 98 |
1v54_F_55 | 1v54 | F | ZNZINC ION | C - 60 |
1v54_F_55 | 1v54 | F | ZNZINC ION | I - 61 |
1v54_F_55 | 1v54 | F | ZNZINC ION | C - 62 |
1v54_F_55 | 1v54 | F | ZNZINC ION | E - 63 |
1v54_F_55 | 1v54 | F | ZNZINC ION | I - 70 |
1v54_F_55 | 1v54 | F | ZNZINC ION | F - 72 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1f0l_A_133 | 1f0l | A | CATREFERS TO CATALYTIC SITE | E - 148 |
Clusters included in this Subclass |
CLUSTER: HA.8.76 |