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Information on SUBCLASS 8.24.1
Subclass Accession number: 6540
Subclass: 8.24.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0030151 (>75 %)  GO:0046914 (>75 %)  
SCOP : 53705 (>75 %)  53706 (>75 %)  53707 (>75 %)  
 Number of loops: 3

Average sequence ID (%) : 38.3 +/- 14.5
Average RMSD (Å) : 0.367 +/- 0.058

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 135-180 rho (°): 270-315
Consensus Sequence: XXCXhCXXGCGh
(φψ)-conformation: bbpaFpaalppb
Pattern: [KQ][QRW][TV][KNT]x[TV][C][CHR][FY][C]x[TV][G][C][G][LVY][HIL][V]x[KTV]
Conservation:-0.104-0.669-0.309-0.631-0.897-0.3941.912-0.7830.5281.912-1.087-0.3910.8871.9120.887-0.669-0.8590.204-0.593-0.859
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1g8k_A_151g8k   A1534QRTNMTCHFCIVGCGYHVYKEEEEEE-SSBTT--EEEEEExbbxbxpaFxaavpxbbbxb
1h0h_A_111h0h   A1130KQTTSVCCYCSVGCGLIVHTEEEEEE-SSBTT--EEEEEExbbbbbpaFxaavpxbbbbb
2nap_A_72nap   A726KWVKGVCRYCGTGCGVLVGVEEEEEE-SS-TT--EEEEEEbbxxbbpaFpaavxxbbxxb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1g8k_A_151g8k   A     EDO1,2-ETHANEDIOL N - 18
1g8k_A_151g8k   A     FS3FE3-S4 CLUSTER C - 21
1g8k_A_151g8k   A     FS3FE3-S4 CLUSTER H - 22
1g8k_A_151g8k   A     FS3FE3-S4 CLUSTER F - 23
1g8k_A_151g8k   A     MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE C - 24
1g8k_A_151g8k   A     FS3FE3-S4 CLUSTER C - 24
1g8k_A_151g8k   A     MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE I - 25
1g8k_A_151g8k   A     FS3FE3-S4 CLUSTER I - 25
1g8k_A_151g8k   A     FS3FE3-S4 CLUSTER V - 26
1g8k_A_151g8k   A     FS3FE3-S4 CLUSTER G - 27
1g8k_A_151g8k   A     FS3FE3-S4 CLUSTER C - 28
1g8k_A_151g8k   A     FS3FE3-S4 CLUSTER Y - 30
1g8k_A_151g8k   A     EDO1,2-ETHANEDIOL H - 31
1h0h_A_111h0h   A     SSULFUR ATOM C - 17
1h0h_A_111h0h   A     FS4IRON/SULFUR CLUSTER C - 17
1h0h_A_111h0h   A     2MDGUANYLATE-O'-PHOSPHORIC ACID MONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,5,6,7,8A,9,10,10A-OCTAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL) ESTER C - 18
1h0h_A_111h0h   A     SSULFUR ATOM C - 18
1h0h_A_111h0h   A     FS4IRON/SULFUR CLUSTER C - 18
1h0h_A_111h0h   A     SSULFUR ATOM Y - 19
1h0h_A_111h0h   A     FS4IRON/SULFUR CLUSTER Y - 19
1h0h_A_111h0h   A     MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE C - 20
1h0h_A_111h0h   A     SSULFUR ATOM C - 20
1h0h_A_111h0h   A     FS4IRON/SULFUR CLUSTER C - 20
1h0h_A_111h0h   A     SSULFUR ATOM S - 21
1h0h_A_111h0h   A     FS4IRON/SULFUR CLUSTER S - 21
1h0h_A_111h0h   A     SSULFUR ATOM V - 22
1h0h_A_111h0h   A     FS4IRON/SULFUR CLUSTER V - 22
1h0h_A_111h0h   A     SSULFUR ATOM G - 23
1h0h_A_111h0h   A     FS4IRON/SULFUR CLUSTER G - 23
1h0h_A_111h0h   A     SSULFUR ATOM C - 24
1h0h_A_111h0h   A     FS4IRON/SULFUR CLUSTER C - 24
1h0h_A_111h0h   A     SSULFUR ATOM L - 26
1h0h_A_111h0h   A     FS4IRON/SULFUR CLUSTER L - 26
2nap_A_72nap   A     FS4IRON/SULFUR CLUSTER C - 13
2nap_A_72nap   A     FS4IRON/SULFUR CLUSTER R - 14
2nap_A_72nap   A     MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE R - 14
2nap_A_72nap   A     FS4IRON/SULFUR CLUSTER Y - 15
2nap_A_72nap   A     FS4IRON/SULFUR CLUSTER C - 16
2nap_A_72nap   A     MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE C - 16
2nap_A_72nap   A     FS4IRON/SULFUR CLUSTER G - 17
2nap_A_72nap   A     MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE G - 17
2nap_A_72nap   A     FS4IRON/SULFUR CLUSTER T - 18
2nap_A_72nap   A     FS4IRON/SULFUR CLUSTER G - 19
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1h0h_A_111h0h   A AC5FS4 BINDING SITE FOR CHAIN AC - 17
1h0h_A_111h0h   A AC5FS4 BINDING SITE FOR CHAIN AY - 19
1h0h_A_111h0h   A AC5FS4 BINDING SITE FOR CHAIN AC - 20
1h0h_A_111h0h   A AC5FS4 BINDING SITE FOR CHAIN AC - 24

Clusters included in this Subclass
CLUSTER: HA.7.121