ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 9.1.1

Subclass Accession number: 6546
Subclass: 9.1.1

PSSM

Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 14

Average sequence ID (%) : 68.3 +/- 27.0
Average RMSD (Å) : 0.464 +/- 0.354

Consensus geometry

d (Å): 9

delta (°): 45-90

theta (°): 135-180

rho (°): 315-360

Consensus Sequence:	phppXDpppSTpS
(φψ)-conformation:	bbppppaaalpbb

Pattern:	[ans]	[tvw]	[lt]	[adet]	[efq]	[d]	[dst]	[aknrs]	[ds]	[gs]	[tv]	[ay]	[sy]	[lm]	[egqs]	[sv]
Conservation:	-0.053	-0.925	-0.524	-0.465	-1.080	2.885	-0.059	-0.630	0.377	0.453	0.679	-0.422	-0.066	1.287	-0.566	-0.891

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
12e8_L_159	12e8	L	162	177	SATDQDSKDSTYSMSS	EE----TTT--EEEEE	bbxxppaaalxbbbbb
1c5c_L_159	1c5c	L	162	177	SVTEQDSKDSTYSLSS	EE----TTT--EEEEE	bbxxxxaaavxbbbbb
1c5d_A_158	1c5d	A	161	176	SVTDQDSKDSTYSMSS	EE----TTTS-EEEEE	bbxxxpaaalbbbbbb
1f9v_A_406	1f9v	A	409	424	NVNEFDDNSGVQSMEV	EE---BTTTTBEEEEE	bbxxpxaaavbbbbbb
1kcu_L_159	1kcu	L	162	177	SWTAQDSKDSTYSMSS	EE----TTT--EEEEE	bbxxpxaaavbbbbbb
1kcv_L_159	1kcv	L	162	177	SWTDQDSASSTYSMSS	EE----TTT--EEEEE	bbxxxxaaavxbbbbb
1lk3_L_158	1lk3	L	161	176	SVTDQDSKDSTYSMSS	EE----TTT--EEEEE	bbxxpxaaalxbbbbb
1mie_H_67	1mie	H	67	82	ATLTVDTSSSTAYMQL	EE---BTTTTB-EEEE	bbxxxbaaavbxbbbb
1mju_L_159	1mju	L	162	177	SWTDQDSKDSTYSMSS	EE----TTT--EEEEE	bbxxxxaaavxbbbbb
1ncw_L_159	1ncw	L	162	177	SWTDQDSKDSTYSMSS	EE----TTTS-EEEEE	bbxxpxaaalbbbbbb
1rhh_A_158	1rhh	A	161	176	SVTEQDSRDSTYSLGS	EE----TTT--EEEEE	bbxxpxaaavxbbbbb
1rur_L_159	1rur	L	162	177	SWTDQDTKDSTYSMSS	EE----TTT--EEEEE	bbxxxxaaalxbbbbb
1wej_L_159	1wej	L	162	177	SWTDQDSKDSTYSMSS	EE--S-TTT--EEEEE	bbxxpxaaavxbbbbb
2h1p_L_163	2h1p	L	167	182	SWTDEDSKDSTYSMSS	EE----TTT--EEEEE	bbxxxxaaaUxbbbbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1c5c_L_159	1c5c	L	GOLGLYCEROL	Q - 160
1c5c_L_159	1c5c	L	GOLGLYCEROL	E - 161
1c5c_L_159	1c5c	L	GOLGLYCEROL	S - 162
1c5c_L_159	1c5c	L	GOLGLYCEROL	S - 176
1c5c_L_159	1c5c	L	GOLGLYCEROL	S - 177
1c5c_L_159	1c5c	L	GOLGLYCEROL	T - 178
1mju_L_159	1mju	L	GOLGLYCEROL	T - 164
1mju_L_159	1mju	L	GOLGLYCEROL	D - 165
1mju_L_159	1mju	L	GOLGLYCEROL	Q - 166
1mju_L_159	1mju	L	GOLGLYCEROL	D - 167
1mju_L_159	1mju	L	GOLGLYCEROL	S - 168
1mju_L_159	1mju	L	GOLGLYCEROL	K - 169
1mju_L_159	1mju	L	GOLGLYCEROL	T - 172
1mju_L_159	1mju	L	GOLGLYCEROL	S - 174
1ncw_L_159	1ncw	L	GOLGLYCEROL	L - 160
1ncw_L_159	1ncw	L	GOLGLYCEROL	N - 161
1ncw_L_159	1ncw	L	GOLGLYCEROL	T - 180
1rur_L_159	1rur	L	ZNZINC ION	D - 167
1rur_L_159	1rur	L	ZNZINC ION	D - 170
1rur_L_159	1rur	L	ZNZINC ION	T - 172
1rur_L_159	1rur	L	ZNZINC ION	S - 174

Clusters included in this Subclass

CLUSTER: HA.10.1