Information on SUBCLASS 10.8.1 |
Subclass Accession number: 6574
Subclass: 10.8.1 Type: HA beta-beta hairpin DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 4 Average sequence ID (%) : 16.7 +/- 23.2 Average RMSD (Å) : 1.425 +/- 0.263 Consensus geometry
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Consensus Sequence: | XXXPppXXhXpXpX |
(φψ)-conformation: | bbpaaalpbpppbb |
Pattern: | x | [LTV] | x | [MTV] | x | x | [RSW] | x | [KP] | [HS] | [DET] | x | x | [LPTV] | x | [DET] | x | x | x | [FTY] | x |
Conservation: | -0.998 | 0.504 | -1.126 | 0.722 | -0.395 | -0.565 | -0.385 | -0.986 | 2.827 | 1.246 | 0.948 | -1.126 | -0.404 | -0.552 | 0.460 | 0.855 | -0.619 | -0.234 | -0.935 | 0.948 | -0.186 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1bfs_*_325 | 1bfs | - | 326 | 346 | SVFVQLRRKSDLETSEPKPFL | EEEEEEE-TTT--B---EEEE | xbbbbxbxaaalxbxxxbwbb |
1ikn_A_266 | 1ikn | A | 267 | 287 | RVSMQLRRPSDRELSEPMEFQ | EEEEEEE-TTT--B---EEEE | xbxbbxbxaaavpbxxxbxbb |
1k3i_A_201 | 1k3i | A | 201 | 221 | ITLTSSWDPSTGIVSDRTVTV | EEEEEEE-TTT--B---EEEE | bbbbbbbbaaavxbxxxbbbx |
1stf_I_94 | 1stf | I | 96 | 116 | HLRVFQSLPHENKPLTLSNYQ | EEEEEEE-GGG----EEEEEE | bbbbxbxxaaalbxxbxabbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1k3i_A_201 | 1k3i | A | ACTACETATE ION | T - 204 |
1k3i_A_201 | 1k3i | A | ACTACETATE ION | S - 205 |
1k3i_A_201 | 1k3i | A | ACTACETATE ION | S - 206 |
1k3i_A_201 | 1k3i | A | ACTACETATE ION | S - 215 |
1k3i_A_201 | 1k3i | A | ACTACETATE ION | D - 216 |
1k3i_A_201 | 1k3i | A | ACTACETATE ION | R - 217 |
1k3i_A_201 | 1k3i | A | ACTACETATE ION | T - 218 |
Clusters included in this Subclass |
CLUSTER: HA.9.39 |