Information on SUBCLASS 13.3.1 |
Subclass Accession number: 6602
Subclass: 13.3.1 Type: HA beta-beta hairpin DB: ArchDB95 Image coordinates: Consensus coordinates: Conserved Annotation GO : GO:0005507 (>75 %) GO:0008471 (>75 %) GO:0016679 (>75 %) GO:0016682 (>75 %) GO:0046914 (>75 %) SCOP : 49502 (>75 %) 49503 (>75 %) 49550 (>75 %) |
Number of loops: 3 Average sequence ID (%) : 71.7 +/- -27.0 Average RMSD (Å) : 0.167 +/- 0.058 Consensus geometry
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Consensus Sequence: | VRSAGSpXYNhXcPhXR |
(φψ)-conformation: | abpplbapbbaaawpbb |
Pattern: | [F] | [AS] | [V] | [V] | [R] | [S] | [A] | [G] | [S] | [ST] | [TV] | [Y] | [N] | [FY] | [DNV] | [DN] | [P] | [IV] | [FK] | [R] |
Conservation: | 1.052 | -0.962 | -0.101 | -0.101 | 0.475 | -0.101 | -0.101 | 1.052 | -0.101 | -0.796 | -1.036 | 1.629 | 1.052 | 0.357 | -2.024 | -0.356 | 1.629 | -0.388 | -1.654 | 0.475 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1gyc_A_404 | 1gyc | A | 404 | 423 | FAVVRSAGSTTYNYNDPIFR | EEEEE-TT-----SSS--EE | bxxabxxvbaxbbaaawxbb |
1hfu_A_405 | 1hfu | A | 405 | 424 | FSVVRSAGSSTYNFVNPVKR | EEEEE-TT------SSB-EE | bxxabxxvbabbbaaawxbb |
1kya_A_404 | 1kya | A | 404 | 423 | FAVVRSAGSTVYNYDNPIFR | EEEEE-TT-----SSS--EE | bxxabxxvbaxbxaaaxxbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1gyc_A_404 | 1gyc | A | NAGN-ACETYL-D-GLUCOSAMINE | R - 408 |
1gyc_A_404 | 1gyc | A | NAGN-ACETYL-D-GLUCOSAMINE | Y - 415 |
Clusters included in this Subclass |
CLUSTER: HA.12.15 |