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Information on SUBCLASS 1.1.5
Subclass Accession number: 6618
Subclass: 1.1.5 PSSM
Type: AR beta-beta link
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 20

Average sequence ID (%) : 6.3 +/- 11.7
Average RMSD (Å) : 0.715 +/- 0.109

Consensus geometry
d (Å): 9 delta (°): 0-45 theta (°): 45-90 rho (°): 135-180
Consensus Sequence: XXXXX
(φψ)-conformation: bbabb
Pattern: xxxx[afgiklmtv]xx
Conservation:0.974-0.410-1.7420.3050.8680.005-1.000
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1afs_A_151afs   A1622IPVLGFGEESSEEEbxabbbx
1b7y_B_1121b7y   B112117RSFGMA.EE-SEE.xxabbx.
1bpy_A_1871bpy   A187193SSGDMDVEESSEEEbxabbbb
1cl8_A_551cl8   A5762YRDSIK.EES-EE.bbabbx.
1dhr_*_1721dhr   -177182LPVTLD.EES-EE.bxabbx.
1h6l_A_3311h6l   A335341QNGENIDEESS-EExbabxbb
1i7q_A_3021i7q   A306312ASPESALEES-EEEbbabpab
1idk_*_411idk   -4450VLTKTFDEE-SEEEbbabxxx
1j79_A_3401j79   A340345TVRWSV.EES-EE.xxabbx.
1jy1_A_5061jy1   A506512KIAWFLVEES-EEEbbabbbb
1k0i_A_701k0i   A7177VHEGVEIEES-EEExbabbbb
1kqf_A_7001kqf   A700706YALEDLYEESS-EEbxabxbb
1ks9_A_1131ks9   A117123TTTHAAREE--EEEbbaxbbb
1lm6_A_1431lm6   A143149RHARVTVEES-EEEbxabbbb
1n5n_A_1001n5n   A104110RPQKVRIEES-EEEbpabbbx
1qcx_A_411qcx   A4450ILDQTFDEE-SEEEbbabxbx
1qdl_A_2171qdl   A222228SSPELLFEES-EEEbxabxab
1qq1_A_1661qq1   A168174ECKAKFIEE-SEEEbbabbbb
1rmg_*_721rmg   -7783QLDGIIYEE-SEEEbxabbbb
2rsp_A_732rsp   A7581KSRDMIEEESS-EEbxaxxbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1afs_A_151afs   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE F - 21
1afs_A_151afs   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE G - 22
1bpy_A_1871bpy   A     DCT2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE S - 187
1bpy_A_1871bpy   A     DCT2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE S - 188
1bpy_A_1871bpy   A     MGMAGNESIUM ION S - 188
1bpy_A_1871bpy   A     DCT2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE G - 189
1bpy_A_1871bpy   A     MGMAGNESIUM ION G - 189
1bpy_A_1871bpy   A     DOC2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE D - 190
1bpy_A_1871bpy   A     DCT2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE D - 190
1bpy_A_1871bpy   A     MGMAGNESIUM ION D - 190
1bpy_A_1871bpy   A     DCT2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE M - 191
1bpy_A_1871bpy   A     MGMAGNESIUM ION M - 191
1bpy_A_1871bpy   A     DOC2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE D - 192
1bpy_A_1871bpy   A     DCT2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE D - 192
1bpy_A_1871bpy   A     MGMAGNESIUM ION D - 192
1dhr_*_1721dhr   *     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE P - 178
1dhr_*_1721dhr   *     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE V - 179
1dhr_*_1721dhr   *     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE T - 180
1dhr_*_1721dhr   *     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE L - 181
1dhr_*_1721dhr   *     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE D - 182
1h6l_A_3311h6l   A     CACALCIUM ION Q - 335
1h6l_A_3311h6l   A     CACALCIUM ION N - 336
1h6l_A_3311h6l   A     CACALCIUM ION G - 337
1h6l_A_3311h6l   A     CACALCIUM ION E - 338
1h6l_A_3311h6l   A     CACALCIUM ION N - 339
1h6l_A_3311h6l   A     CACALCIUM ION I - 340
1h6l_A_3311h6l   A     CACALCIUM ION D - 341
1i7q_A_3021i7q   A     BEZBENZOIC ACID P - 308
1i7q_A_3021i7q   A     BEZBENZOIC ACID E - 309
1i7q_A_3021i7q   A     PYRPYRUVIC ACID E - 309
1jy1_A_5061jy1   A     MSESELENOMETHIONINE K - 506
1jy1_A_5061jy1   A     MSESELENOMETHIONINE I - 507
1jy1_A_5061jy1   A     MSESELENOMETHIONINE W - 509
1jy1_A_5061jy1   A     MSESELENOMETHIONINE F - 510
1jy1_A_5061jy1   A     MSESELENOMETHIONINE L - 511
1rmg_*_721rmg   *     NAGN-ACETYL-D-GLUCOSAMINE Y - 83
1rmg_*_721rmg   *     MANALPHA-D-MANNOSE Y - 83
1rmg_*_721rmg   *     NAGN-ACETYL-D-GLUCOSAMINE R - 84
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1bpy_A_1871bpy   A ACTACTIVE SITE OF NUCLEOTIDYL TRANSFER.D - 190
1bpy_A_1871bpy   A ACTACTIVE SITE OF NUCLEOTIDYL TRANSFER.D - 192
1h6l_A_3311h6l   A AC2STRUCTURAL CA 402 BINDING SITE FOR CHAIN AN - 336
1h6l_A_3311h6l   A AC2STRUCTURAL CA 402 BINDING SITE FOR CHAIN AE - 338
1h6l_A_3311h6l   A AC1STRUCTURAL CA 401 BINDING SITE FOR CHAIN AN - 339
1h6l_A_3311h6l   A AC1STRUCTURAL CA 401 BINDING SITE FOR CHAIN AI - 340
1h6l_A_3311h6l   A AC1STRUCTURAL CA 401 BINDING SITE FOR CHAIN AD - 341

Clusters included in this Subclass
CLUSTER: AR.1.10
CLUSTER: AR.2.7