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Information on SUBCLASS 1.1.8
Subclass Accession number: 6621
Subclass: 1.1.8 PSSM
Type: AR beta-beta link
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 5

Average sequence ID (%) : 14.3 +/- 17.7
Average RMSD (Å) : 0.480 +/- 0.205

Consensus geometry
d (Å): 7 delta (°): 45-90 theta (°): 90-135 rho (°): 45-90
Consensus Sequence: phcXh
(φψ)-conformation: bbabb
Pattern: [ekst]x[DGR][ADK][ILMTV]x[FILV]
Conservation:-1.1290.4940.644-0.2840.599-1.4991.175
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1bpy_A_1871bpy   A187193SSGDMDVEESSEEEbxabbbb
1f52_A_1231f52   A134140LFDDIRFEESEEEEbbabbbb
1lpf_A_2641lpf   A268274TFDKLIVEES-EEEbbabbbb
1nek_A_1901nek   A194200KARATVLEES-EEExbabbxb
1nek_A_51nek   A713EFDAVVIEES-EEExbabbbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1bpy_A_1871bpy   A     DCT2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE S - 187
1bpy_A_1871bpy   A     DCT2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE S - 188
1bpy_A_1871bpy   A     MGMAGNESIUM ION S - 188
1bpy_A_1871bpy   A     DCT2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE G - 189
1bpy_A_1871bpy   A     MGMAGNESIUM ION G - 189
1bpy_A_1871bpy   A     DOC2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE D - 190
1bpy_A_1871bpy   A     DCT2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE D - 190
1bpy_A_1871bpy   A     MGMAGNESIUM ION D - 190
1bpy_A_1871bpy   A     DCT2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE M - 191
1bpy_A_1871bpy   A     MGMAGNESIUM ION M - 191
1bpy_A_1871bpy   A     DOC2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE D - 192
1bpy_A_1871bpy   A     DCT2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE D - 192
1bpy_A_1871bpy   A     MGMAGNESIUM ION D - 192
1f52_A_1231f52   A     ADPADENOSINE-5'-DIPHOSPHATE L - 125
1f52_A_1231f52   A     ADPADENOSINE-5'-DIPHOSPHATE F - 126
1f52_A_1231f52   A     ADPADENOSINE-5'-DIPHOSPHATE G - 127
1f52_A_1231f52   A     ADPADENOSINE-5'-DIPHOSPHATE P - 128
1f52_A_1231f52   A     MNMANGANESE (II) ION E - 129
1f52_A_1231f52   A     ADPADENOSINE-5'-DIPHOSPHATE E - 129
1f52_A_1231f52   A     MNMANGANESE (II) ION E - 131
1nek_A_51nek   A     FADFLAVIN-ADENINE DINUCLEOTIDE I - 13
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1bpy_A_1871bpy   A ACTACTIVE SITE OF NUCLEOTIDYL TRANSFER.D - 190
1bpy_A_1871bpy   A ACTACTIVE SITE OF NUCLEOTIDYL TRANSFER.D - 192

Clusters included in this Subclass
CLUSTER: AR.1.43
CLUSTER: AR.3.57