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Information on SUBCLASS 4.9.2
Subclass Accession number: 664
Subclass: 4.9.2 PSSM
Type: HA beta-beta hairpin
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 5

Average sequence ID (%) : 15.7 +/- 25.3
Average RMSD (Å) : 0.560 +/- 0.167

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: XpcXcphX
(φψ)-conformation: bpaalabb
Pattern: [GL]xxx[DNR][DGKR][ADKN][GKQ][NRST][AFY]x[IVY][itw]x
Conservation:-0.2860.632-0.148-0.8310.906-0.460-0.6060.7490.3941.779-0.9471.460-1.283-1.361
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1lf6_A_1071lf6   A109122LVNTDKKGRYRITKEEEEETTSSEEEEEbbbbpaalabbbbb
1m15_A_2091m15   A209222GIFHNDAKTFLVWVEEEEETTSSEEEEEebxbxaavabbbxb
1orv_A_3101orv   A313326LQWIRRAQNYSIIDEEEEETTSSEEEEEbbbbxaavabbbbb
1qh4_A_2161qh4   A216229GIWHNDNKTFLVWIEEEEETTSSEEEEEbbbbxaavabbbxb
1uuz_A_671uuz   A7083LVAFRGDKSAAYGLEEEEETTSS-EEEEbbbxxaalabbbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1m15_A_2091m15   A     MGMAGNESIUM ION W - 221
1m15_A_2091m15   A     ADPADENOSINE-5'-DIPHOSPHATE W - 221
1orv_A_3101orv   A     NAGN-ACETYL-D-GLUCOSAMINE R - 317
1orv_A_3101orv   A     NAGN-ACETYL-D-GLUCOSAMINE A - 319
1orv_A_3101orv   A     NAGN-ACETYL-D-GLUCOSAMINE N - 321
1orv_A_3101orv   A     NAGN-ACETYL-D-GLUCOSAMINE Y - 322

Clusters included in this Subclass
CLUSTER: HA.3.116
CLUSTER: HA.5.125