Information on SUBCLASS 4.9.2 |
Subclass Accession number: 664
Subclass: 4.9.2 Type: HA beta-beta hairpin DB: ArchDB40 Image coordinates: Consensus coordinates: |
Number of loops: 5 Average sequence ID (%) : 15.7 +/- 25.3 Average RMSD (Å) : 0.560 +/- 0.167 Consensus geometry
|
Consensus Sequence: | XpcXcphX |
(φψ)-conformation: | bpaalabb |
Pattern: | [GL] | x | x | x | [DNR] | [DGKR] | [ADKN] | [GKQ] | [NRST] | [AFY] | x | [IVY] | [itw] | x |
Conservation: | -0.286 | 0.632 | -0.148 | -0.831 | 0.906 | -0.460 | -0.606 | 0.749 | 0.394 | 1.779 | -0.947 | 1.460 | -1.283 | -1.361 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1lf6_A_107 | 1lf6 | A | 109 | 122 | LVNTDKKGRYRITK | EEEEETTSSEEEEE | bbbbpaalabbbbb |
1m15_A_209 | 1m15 | A | 209 | 222 | GIFHNDAKTFLVWV | EEEEETTSSEEEEE | ebxbxaavabbbxb |
1orv_A_310 | 1orv | A | 313 | 326 | LQWIRRAQNYSIID | EEEEETTSSEEEEE | bbbbxaavabbbbb |
1qh4_A_216 | 1qh4 | A | 216 | 229 | GIWHNDNKTFLVWI | EEEEETTSSEEEEE | bbbbxaavabbbxb |
1uuz_A_67 | 1uuz | A | 70 | 83 | LVAFRGDKSAAYGL | EEEEETTSS-EEEE | bbbxxaalabbbbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1m15_A_209 | 1m15 | A | MGMAGNESIUM ION | W - 221 |
1m15_A_209 | 1m15 | A | ADPADENOSINE-5'-DIPHOSPHATE | W - 221 |
1orv_A_310 | 1orv | A | NAGN-ACETYL-D-GLUCOSAMINE | R - 317 |
1orv_A_310 | 1orv | A | NAGN-ACETYL-D-GLUCOSAMINE | A - 319 |
1orv_A_310 | 1orv | A | NAGN-ACETYL-D-GLUCOSAMINE | N - 321 |
1orv_A_310 | 1orv | A | NAGN-ACETYL-D-GLUCOSAMINE | Y - 322 |
Clusters included in this Subclass |
CLUSTER: HA.3.116 |
CLUSTER: HA.5.125 |