ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 2.1.3

Subclass Accession number: 6644
Subclass: 2.1.3

PSSM

Type: AR beta-beta link
DB: ArchDB-EC

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 14

Average sequence ID (%) : 7.0 +/- 13.1
Average RMSD (Å) : 0.571 +/- 0.209

Consensus geometry

d (Å): 9

delta (°): 0-45

theta (°): 45-90

rho (°): 90-135

Consensus Sequence:	XXXXXX
(φψ)-conformation:	bbpabb

Pattern:	x	x	x	x	x	x
Conservation:	-0.241	-0.318	1.907	-0.325	-1.049	0.026

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1aug_A_79	1aug	A	79	84	TPERVA	EEBSEE	bpxabb
1bd3_A_213	1bd3	A	218	223	AVDICL	EE-SEE	bbxabb
1dv1_B_352	1dv1	B	352	357	GKITRF	EE--EE	exxabb
1dyp_A_159	1dyp	A	163	168	EIDVVE	EE-SEE	bbbabb
1fp3_A_224	1fp3	A	224	229	AVLENV	EE-SEE	bbbabb
1gs5_A_142	1gs5	A	144	149	VVSSIG	EE-SEE	bbxaxb
1jb1_A_225	1jb1	A	226	231	TTISLI	EE--EE	bxxabb
1jhd_A_111	1jhd	A	115	120	MDIEAI	EE--EE	bbxabb
1k82_A_46	1k82	A	46	51	QPVLSV	EEB-EE	bxxabb
1ko7_A_221	1ko7	A	222	227	KRLRLN	EE--EE	bxxabb
1q16_A_1221	1q16	A	1225	1230	RKMKNI	EE-SEE	bxxaxb
1qq4_A_15	1qq4	A	17	22	CSVGFS	EE--EE	bbxabx
1sgp_E_41	1sgp	E	42	47	CSLGFN	EE--EE	bbxabx
2hlc_A_81	2hlc	A	83	88	VNSERI	EE-SEE	bxxabb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1dyp_A_159	1dyp	A	MSESELENOMETHIONINE	Y - 161
1dyp_A_159	1dyp	A	MSESELENOMETHIONINE	S - 162
1dyp_A_159	1dyp	A	MSESELENOMETHIONINE	E - 163
1dyp_A_159	1dyp	A	CDCADMIUM ION	E - 163
1dyp_A_159	1dyp	A	MSESELENOMETHIONINE	I - 164
1dyp_A_159	1dyp	A	MSESELENOMETHIONINE	D - 165
1dyp_A_159	1dyp	A	CDCADMIUM ION	D - 165
1dyp_A_159	1dyp	A	MSESELENOMETHIONINE	V - 166
1dyp_A_159	1dyp	A	CDCADMIUM ION	E - 168
1gs5_A_142	1gs5	A	NLGN-ACETYL-L-GLUTAMATE	S - 147
1jb1_A_225	1jb1	A	MSESELENOMETHIONINE	I - 228
1sgp_E_41	1sgp	E	PO4PHOSPHATE ION	R - 41

Clusters included in this Subclass

CLUSTER: AR.1.14