ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 2.1.8

Subclass Accession number: 6649
Subclass: 2.1.8

PSSM

Type: AR beta-beta link
DB: ArchDB-EC

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 5

Average sequence ID (%) : 12.9 +/- 16.4
Average RMSD (Å) : 0.620 +/- 0.084

Consensus geometry

d (Å): 13

delta (°): 0-45

theta (°): 0-45

rho (°): 270-315

Consensus Sequence:	hXXXXh
(φψ)-conformation:	bbpabb

Pattern:	[FIV]	[apvy]	[LMTV]	x	[GSV]	[DGTV]	[AFIV]
Conservation:	1.763	-1.163	0.560	-0.691	-0.358	-0.609	0.498

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1fc4_A_176	1fc4	A	178	184	IATDGVF	EE-BSEE	bbbxabx
1kht_A_87	1kht	A	89	95	VDTHSTV	EE--SEE	xxbbabb
1odz_A_315	1odz	A	315	321	IPVISGI	EE-B-EE	bxbbabb
1php_*_259	1php	-	260	266	FYMPVDV	EE--SEE	bbbpabb
1vpe_*_259	1vpe	-	260	266	IVLPVDA	EE--SEE	bxbxabb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1fc4_A_176	1fc4	A	MSESELENOMETHIONINE	V - 176
1fc4_A_176	1fc4	A	MSESELENOMETHIONINE	L - 177
1fc4_A_176	1fc4	A	MSESELENOMETHIONINE	I - 178
1fc4_A_176	1fc4	A	MSESELENOMETHIONINE	A - 179
1fc4_A_176	1fc4	A	MSESELENOMETHIONINE	T - 180
1fc4_A_176	1fc4	A	MSESELENOMETHIONINE	D - 181
1fc4_A_176	1fc4	A	PLPPYRIDOXAL-5'-PHOSPHATE	D - 181
1fc4_A_176	1fc4	A	PLPPYRIDOXAL-5'-PHOSPHATE	G - 182
1fc4_A_176	1fc4	A	PLPPYRIDOXAL-5'-PHOSPHATE	V - 183
1fc4_A_176	1fc4	A	MSESELENOMETHIONINE	F - 184
1odz_A_315	1odz	A	MANALPHA-D-MANNOSE	G - 320
1odz_A_315	1odz	A	MANALPHA-D-MANNOSE	I - 321

Clusters included in this Subclass

CLUSTER: AR.2.51