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Information on SUBCLASS 2.6.1
Subclass Accession number: 6672
Subclass: 2.6.1 PSSM
Type: AR beta-beta link
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 8

Average sequence ID (%) : 15.5 +/- 20.1
Average RMSD (Å) : 0.550 +/- 0.200

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 90-135 rho (°): 180-225
Consensus Sequence: XpXXhX
(φψ)-conformation: bbalbb
Pattern: x[CDKNTY][ntv][dgkq][ivwy][aeqrst]
Conservation:-1.318-0.6251.625-0.2230.4080.133
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1gpu_A_1801gpu   A185190DDNKITEE-SEExxalbb
1hkv_A_1561hkv   A162167LTVGVEEE-SEEbbalbb
1l8a_A_2531l8a   A258263NCNLQREE-SEExxavbb
1lcy_A_2271lcy   A227232RYIGVMEE--EExbavbb
1ols_A_2151ols   A220225RNNGYAEE-SEExbavbb
1q5h_A_391q5h   A4348VKTDIQEE--EExxalbb
1qgd_A_1781qgd   A183188DDNGISEE-SEExxavbb
1qs0_A_2351qs0   A240245VNNQWAEE-SEExxavbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1gpu_A_1801gpu   A     CACALCIUM ION D - 185
1gpu_A_1801gpu   A     THD2-[3-[(4-AMINO-2-METHYL-5-PYRIMIDINYL)METHYL]-2-(1,2-DIHYDROXYETHYL)-4-METHYL-1,3-THIAZOL-3-IUM-5-YL]ETHYL TRIHYDROGEN DIPHOSPHATE D - 185
1gpu_A_1801gpu   A     CACALCIUM ION D - 186
1gpu_A_1801gpu   A     CACALCIUM ION N - 187
1gpu_A_1801gpu   A     THD2-[3-[(4-AMINO-2-METHYL-5-PYRIMIDINYL)METHYL]-2-(1,2-DIHYDROXYETHYL)-4-METHYL-1,3-THIAZOL-3-IUM-5-YL]ETHYL TRIHYDROGEN DIPHOSPHATE N - 187
1gpu_A_1801gpu   A     CACALCIUM ION K - 188
1gpu_A_1801gpu   A     CACALCIUM ION I - 189
1gpu_A_1801gpu   A     THD2-[3-[(4-AMINO-2-METHYL-5-PYRIMIDINYL)METHYL]-2-(1,2-DIHYDROXYETHYL)-4-METHYL-1,3-THIAZOL-3-IUM-5-YL]ETHYL TRIHYDROGEN DIPHOSPHATE I - 189
1gpu_A_1801gpu   A     CACALCIUM ION T - 190
1gpu_A_1801gpu   A     THD2-[3-[(4-AMINO-2-METHYL-5-PYRIMIDINYL)METHYL]-2-(1,2-DIHYDROXYETHYL)-4-METHYL-1,3-THIAZOL-3-IUM-5-YL]ETHYL TRIHYDROGEN DIPHOSPHATE T - 190
1hkv_A_1561hkv   A     PLPPYRIDOXAL-5'-PHOSPHATE R - 161
1hkv_A_1561hkv   A     LYSLYSINE H - 169
1l8a_A_2531l8a   A     TDPTHIAMIN DIPHOSPHATE N - 258
1l8a_A_2531l8a   A     MGMAGNESIUM ION N - 258
1l8a_A_2531l8a   A     MGMAGNESIUM ION C - 259
1l8a_A_2531l8a   A     TDPTHIAMIN DIPHOSPHATE N - 260
1l8a_A_2531l8a   A     MGMAGNESIUM ION N - 260
1l8a_A_2531l8a   A     MGMAGNESIUM ION L - 261
1l8a_A_2531l8a   A     TDPTHIAMIN DIPHOSPHATE Q - 262
1l8a_A_2531l8a   A     MGMAGNESIUM ION Q - 262
1l8a_A_2531l8a   A     TDPTHIAMIN DIPHOSPHATE R - 263
1l8a_A_2531l8a   A     MGMAGNESIUM ION R - 263
1ols_A_2151ols   A     MNMANGANESE (II) ION R - 220
1ols_A_2151ols   A     TDPTHIAMIN DIPHOSPHATE R - 220
1ols_A_2151ols   A     MNMANGANESE (II) ION N - 221
1ols_A_2151ols   A     MNMANGANESE (II) ION N - 222
1ols_A_2151ols   A     TDPTHIAMIN DIPHOSPHATE N - 222
1ols_A_2151ols   A     MNMANGANESE (II) ION G - 223
1ols_A_2151ols   A     MNMANGANESE (II) ION Y - 224
1ols_A_2151ols   A     TDPTHIAMIN DIPHOSPHATE Y - 224
1ols_A_2151ols   A     MNMANGANESE (II) ION A - 225
1ols_A_2151ols   A     TDPTHIAMIN DIPHOSPHATE A - 225
1qgd_A_1781qgd   A     CACALCIUM ION D - 183
1qgd_A_1781qgd   A     TPPTHIAMINE DIPHOSPHATE D - 183
1qgd_A_1781qgd   A     CACALCIUM ION N - 185
1qgd_A_1781qgd   A     TPPTHIAMINE DIPHOSPHATE N - 185
1qgd_A_1781qgd   A     CACALCIUM ION G - 186
1qgd_A_1781qgd   A     CACALCIUM ION I - 187
1qgd_A_1781qgd   A     TPPTHIAMINE DIPHOSPHATE I - 187
1qgd_A_1781qgd   A     CACALCIUM ION S - 188
1qgd_A_1781qgd   A     TPPTHIAMINE DIPHOSPHATE S - 188
1qs0_A_2351qs0   A     MSESELENOMETHIONINE V - 235
1qs0_A_2351qs0   A     MGMAGNESIUM ION V - 240
1qs0_A_2351qs0   A     TDPTHIAMIN DIPHOSPHATE V - 240
1qs0_A_2351qs0   A     MGMAGNESIUM ION N - 241
1qs0_A_2351qs0   A     MGMAGNESIUM ION N - 242
1qs0_A_2351qs0   A     TDPTHIAMIN DIPHOSPHATE N - 242
1qs0_A_2351qs0   A     MGMAGNESIUM ION Q - 243
1qs0_A_2351qs0   A     MGMAGNESIUM ION W - 244
1qs0_A_2351qs0   A     TDPTHIAMIN DIPHOSPHATE W - 244
1qs0_A_2351qs0   A     MGMAGNESIUM ION A - 245
1qs0_A_2351qs0   A     TDPTHIAMIN DIPHOSPHATE A - 245
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gpu_A_1801gpu   A AC1CA BINDING SITE FOR CHAIN AN - 187
1gpu_A_1801gpu   A AC1CA BINDING SITE FOR CHAIN AI - 189
1hkv_A_1561hkv   A PLAPLP BINDING SITE FOR CHAIN AR - 161
1ols_A_2151ols   A TDPTDP BINDING SITE FOR CHAIN AR - 220
1ols_A_2151ols   A MN1MN BINDING SITE FOR CHAIN AN - 222
1ols_A_2151ols   A MN1MN BINDING SITE FOR CHAIN AY - 224
1ols_A_2151ols   A TDPTDP BINDING SITE FOR CHAIN AA - 225
1qgd_A_1781qgd   A TPACOFACTOR BINDINGN - 185
1qgd_A_1781qgd   A TPACOFACTOR BINDINGI - 187
1qgd_A_1781qgd   A TPACOFACTOR BINDINGS - 188

Clusters included in this Subclass
CLUSTER: AR.1.17