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Information on SUBCLASS 3.6.1
Subclass Accession number: 6718
Subclass: 3.6.1 PSSM
Type: AR beta-beta link
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 17

Average sequence ID (%) : 20.4 +/- 19.3
Average RMSD (Å) : 0.541 +/- 0.235

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 135-180 rho (°): 180-225
Consensus Sequence: XNXXppX
(φψ)-conformation: bbapabp
Pattern: [fhivwy]x[acilmtv]x[KN]x[dgst][DKPQRST][dekrstw][deknpst][afiv][ehkqsty][filmtv]
Conservation:-0.310-0.5680.124-0.7263.111-0.8160.2580.091-0.530-0.125-0.345-0.3870.224
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1bag_*_3701bag   -371383VVLANAGSSSVSIEEEEE-SSS-EEEbbbbbaxabxbxb
1bf2_*_6811bf2   -682694YVAYNGWSSSVTFEEEEE-SSS-EEEbbbbxaxabpbxx
1dun_*_801dun   -8193VICTNIGKSNIKLEEEEE-SSS-EEEbxbbbaxabpbbb
1e9y_A_1281e9y   A129141VKVKNVGDRPVQIEEEEE-SSS-EEEbxbbxaxabwbbx
1ejx_B_20211ejx   B20242036VVVENHGDRPIQVEEEEE-SSS-EEEbxbbxaxabxbbb
1euw_A_961euw   A99111ISVWNRGQDSFTIEEEEE-SSS-EEEbxbbxababpbbx
1f7d_A_791f7d   A8092VIMINVSRKSITLEEEEE-SSS-EEEbxbbxaxabpbbx
1fi2_A_1371fi2   A137149HFQFNVGKTEAYMEEEEE-SSS-EEEbbbbxaxabxbbb
1ji1_A_5781ji1   A580592AVVLNNDSVSHTVEEEEE-SSS-EEEbxbbbaxabxbxb
1m7x_A_6501m7x   A652664IVASNFTPVPRHDEEEEE-SS--EEExbbbbabaxwbbl
1n7o_A_6771n7o   A682694SNIQNTSTDTAATEEEEE-SSS-EEEbvxbbaxaxxbbb
1n7o_A_8341n7o   A835847WGIVKYDDSVSTIEEEEESS-S-EEEbbbbbabaxxbxb
1ogs_A_4561ogs   A458470VVVLNRSSKDVPLEEEEE-SSS-EEEbbbbbaxabxbwb
1q5h_A_871q5h   A88100VVLFNFGKEKFEVEEEEE-SSS-EEEbxxbbaxabpbbb
1qxr_A_1351qxr   A136148HRTVNIGDEPFIFEEEEE-SSS-EEEbbbbxababpbbb
1smd_*_4251smd   -426438FIVFNNDDWTFSLEEEEE-SSS-EEEbbbbbaxabpbbb
4ubp_B_274ubp   B3042IRVSNTGDRPIQVEEEEE-SSS-EEEbxbbxaxabxbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1euw_A_961euw   A     EMCETHYL MERCURY ION Q - 96
1euw_A_961euw   A     GOLGLYCEROL Q - 96
1euw_A_961euw   A     GOLGLYCEROL L - 97
1euw_A_961euw   A     GOLGLYCEROL M - 98
1euw_A_961euw   A     GOLGLYCEROL I - 99
1euw_A_961euw   A     GOLGLYCEROL S - 100
1fi2_A_1371fi2   A     MNMANGANESE (II) ION H - 137
1fi2_A_1371fi2   A     MNMANGANESE (II) ION Q - 139
1fi2_A_1371fi2   A     MNMANGANESE (II) ION M - 149
1fi2_A_1371fi2   A     MNMANGANESE (II) ION V - 151
1fi2_A_1371fi2   A     MNMANGANESE (II) ION F - 153
1q5h_A_871q5h   A     DUDDEOXYURIDINE-5'-DIPHOSPHATE G - 87
1q5h_A_871q5h   A     DUDDEOXYURIDINE-5'-DIPHOSPHATE V - 88
1q5h_A_871q5h   A     DUDDEOXYURIDINE-5'-DIPHOSPHATE V - 89
1qxr_A_1351qxr   A     NINICKEL (II) ION H - 136
1qxr_A_1351qxr   A     PA55-PHOSPHOARABINONIC ACID H - 136
1qxr_A_1351qxr   A     PA55-PHOSPHOARABINONIC ACID R - 137
1qxr_A_1351qxr   A     PA55-PHOSPHOARABINONIC ACID T - 138
1qxr_A_1351qxr   A     PA55-PHOSPHOARABINONIC ACID F - 148
1qxr_A_1351qxr   A     PA55-PHOSPHOARABINONIC ACID A - 150
1qxr_A_1351qxr   A     PA55-PHOSPHOARABINONIC ACID I - 151
1qxr_A_1351qxr   A     NINICKEL (II) ION Y - 152
1qxr_A_1351qxr   A     PA55-PHOSPHOARABINONIC ACID Y - 152
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1ogs_A_4561ogs   A AC8SO4 BINDING SITE FOR CHAIN AK - 473

Clusters included in this Subclass
CLUSTER: AR.4.6
CLUSTER: AR.5.5
CLUSTER: AR.5.98
CLUSTER: AR.6.2