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PDB code:

Information on SUBCLASS 4.2.1

Subclass Accession number: 6752 Subclass: 4.2.1 Type: AR beta-beta link DB: ArchDB-EC Image coordinates: Consensus coordinates:

Number of loops: 21 Average sequence ID (%) : 8.7 +/- 13.2 Average RMSD (Å) : 0.810 +/- 0.318 Consensus geometry d (Å): 13 delta (°): 0-45 theta (°): 90-135 rho (°): 135-180

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1b0a_A_226	1b0a	A	226	234	IVIDVGINR	EEEE---EE	bxbxaxbbx
1dun_*_19	1dun	-	20	28	DLCVPYDIM	EEE-SS-EE	xbbxabxbb
1dun_*_34	1dun	-	36	44	IIPTDVKIQ	EEE---EEE	bxxbaxbbb
1f7d_A_18	1f7d	A	19	27	DLLAAKEIH	EEE-SS-EE	xbbxabxbb
1ga6_A_129	1ga6	A	129	137	VINVSLGWC	EEEE---EE	bbxbabbbp
1hyo_A_257	1hyo	A	257	265	TTISPWVVP	EEE-S-BEE	bbbxaxxxx
1is8_A_114	1is8	A	114	122	DEDHDEMVI	EEEE-S-EE	balxabpbb
1kig_H_148	1kig	H	148	156	GRLSSTLKM	EEE-SS-EE	bxpxabxbb
1lml_*_101	1lml	-	101	108	.VRDVNWGA	.EE-SS-EE	.bbxaxxbx
1lns_A_601	1lns	A	604	612	DLELPSMLT	EEE-SS-EE	xxxxabxbb
1lwd_A_5	1lwd	A	5	12	.IKVAKPVV	.EE-SS-EE	.xxbabxbx
1m4i_A_132	1m4i	A	132	139	.LPWHGPTS	.EE--S-EE	.bxxaxxbb
1mq7_A_26	1mq7	A	28	36	DLYSAEDVE	EEE-SS-EE	xbbxabxbb
1nr6_A_365	1nr6	A	365	372	.HAVTRDVR	.EE-SS-EE	.bbxabpbb
1obd_A_30	1obd	A	33	41	FVATDRISA	EEE-S--EE	bbxxaxbbb
1od2_A_1887	1od2	A	1892	1900	IGVETRTVE	EEE--S-EE	bbbxaxxxx
1p42_A_130	1p42	A	130	137	.FVVEEPII	.EE--S-EE	.xbxabwbb
1po5_A_369	1po5	A	369	376	.HTVTKDTQ	.EE-SS-EE	.bbxabpbx
1q5h_A_24	1q5h	A	26	34	DLYSAYDYT	EEE-SS-EE	xbbxabxbb
2pva_A_47	2pva	A	47	55	VINNSYAFV	EE--SS-EE	bbxxabxbb
3cla_*_82	3cla	-	83	91	LIVWDSVDP	EEEES--EE	xbbxabbbw

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1ga6_A_129	1ga6	A	ACTACETATE ION	V - 132
1ga6_A_129	1ga6	A	ACTACETATE ION	S - 133
1ga6_A_129	1ga6	A	ACTACETATE ION	L - 134
1ga6_A_129	1ga6	A	ACTACETATE ION	G - 135
1ga6_A_129	1ga6	A	ACTACETATE ION	W - 136
1hyo_A_257	1hyo	A	MGMAGNESIUM ION	T - 257
1hyo_A_257	1hyo	A	MGMAGNESIUM ION	T - 258
1is8_A_114	1is8	A	ZNZINC ION	C - 132
1nr6_A_365	1nr6	A	HEMPROTOPORPHYRIN IX CONTAINING FE	H - 365
1obd_A_30	1obd	A	ATPADENOSINE-5'-TRIPHOSPHATE	L - 31
1obd_A_30	1obd	A	ATPADENOSINE-5'-TRIPHOSPHATE	F - 33
1od2_A_1887	1od2	A	MSESELENOMETHIONINE	L - 1889
1od2_A_1887	1od2	A	MSESELENOMETHIONINE	G - 1890
1od2_A_1887	1od2	A	MSESELENOMETHIONINE	V - 1891
1od2_A_1887	1od2	A	MSESELENOMETHIONINE	I - 1892
1od2_A_1887	1od2	A	MSESELENOMETHIONINE	G - 1893
1po5_A_369	1po5	A	HEMPROTOPORPHYRIN IX CONTAINING FE	H - 369
1q5h_A_24	1q5h	A	DUDDEOXYURIDINE-5'-DIPHOSPHATE	D - 26
3cla_*_82	3cla	*	COCOBALT (II) ION	D - 87
3cla_*_82	3cla	*	CLMCHLORAMPHENICOL	Q - 92
3cla_*_82	3cla	*	CLMCHLORAMPHENICOL	T - 94

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1obd_A_30	1obd	A	AC2ATP BINDING SITE FOR CHAIN A	L - 31
1obd_A_30	1obd	A	AC2ATP BINDING SITE FOR CHAIN A	F - 33

Clusters included in this Subclass

CLUSTER: AR.3.25

CLUSTER: AR.4.13

CLUSTER: AR.4.31

CLUSTER: AR.5.10

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