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Information on SUBCLASS 5.8.1
Subclass Accession number: 6812
Subclass: 5.8.1 PSSM
Type: AR beta-beta link
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 7

Average sequence ID (%) : 16.7 +/- 20.9
Average RMSD (Å) : 0.800 +/- 0.424

Consensus geometry
d (Å): 17 delta (°): 0-45 theta (°): 90-135 rho (°): 45-90
Consensus Sequence: XXhXchphh
(φψ)-conformation: bbppppabb
Pattern: xx[fvy][ekp][DGKQ][FIPVY][dky][flmv][aem]x
Conservation:-0.701-1.6800.2601.0611.7980.163-0.4510.4530.005-0.908
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1dmr_*_4181dmr   -420429SKFPDVKMAYEE-----EEEbbxxxxabbb
1eu1_A_4181eu1   A420429ATYPDVKLAYEE-----EEEbbxxxxabbb
1evl_A_2911evl   A291300QEVKGPFMMDEE----SEEExbbbxxabbp
1kjq_A_1921kjq   A195204EGVVKFDFEIEE----SEEEbxxxxxabbb
1nb8_A_3401nb8   A342351DRREDYYDIQEE---BS-EEbbxbbbabbx
1poi_A_1601poi   A168177VPVPQVDVAIEE----SEEEbxxxbxabbb
1tmo_*_4281tmo   -429438VVYPDIKMMIEE-----EEEbbxxbxabbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1dmr_*_4181dmr   *     PGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE W - 430
1dmr_*_4181dmr   *     OOXYGEN ATOM W - 430
1dmr_*_4181dmr   *     PGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE V - 431
1dmr_*_4181dmr   *     OOXYGEN ATOM V - 431
1eu1_A_4181eu1   A     GLCGLUCOSE Y - 422
1eu1_A_4181eu1   A     MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE W - 430
1eu1_A_4181eu1   A     MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE A - 431
1kjq_A_1921kjq   A     ADPADENOSINE-5'-DIPHOSPHATE E - 195
1kjq_A_1921kjq   A     ADPADENOSINE-5'-DIPHOSPHATE G - 196
1kjq_A_1921kjq   A     ADPADENOSINE-5'-DIPHOSPHATE V - 197
1kjq_A_1921kjq   A     ADPADENOSINE-5'-DIPHOSPHATE V - 198
1kjq_A_1921kjq   A     ADPADENOSINE-5'-DIPHOSPHATE K - 199
1kjq_A_1921kjq   A     ADPADENOSINE-5'-DIPHOSPHATE F - 200
1kjq_A_1921kjq   A     ADPADENOSINE-5'-DIPHOSPHATE E - 203
1nb8_A_3401nb8   A     MSESELENOMETHIONINE R - 343
1nb8_A_3401nb8   A     MSESELENOMETHIONINE R - 344
1nb8_A_3401nb8   A     MSESELENOMETHIONINE E - 345
1nb8_A_3401nb8   A     MSESELENOMETHIONINE D - 346
1nb8_A_3401nb8   A     MSESELENOMETHIONINE Y - 347
1nb8_A_3401nb8   A     MSESELENOMETHIONINE D - 349
1nb8_A_3401nb8   A     MSESELENOMETHIONINE Q - 351
1tmo_*_4281tmo   *     2MDGUANYLATE-O'-PHOSPHORIC ACID MONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,5,6,7,8A,9,10,10A-OCTAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL) ESTER S - 440

Clusters included in this Subclass
CLUSTER: AR.5.40
CLUSTER: AR.6.20