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Information on SUBCLASS 4.28.1
Subclass Accession number: 684
Subclass: 4.28.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0003723 (>50 %)  GO:0003729 (>50 %)  GO:0008248 (>50 %)  
SCOP : 50181 (>50 %)  50182 (>50 %)  50183 (>50 %)  
 Number of loops: 3

Average sequence ID (%) : 13.9 +/- 16.9
Average RMSD (Å) : 0.633 +/- 0.153

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 135-180 rho (°): 45-90
Consensus Sequence: hXXphphh
(φψ)-conformation: bbaalpbb
Pattern: x[EKQ][GSV][FLV]xx[HN][GM][EKN][LV][VWY][AKL]
Conservation:-1.2070.831-1.207-0.134-0.458-0.4402.1830.0330.2940.9110.294-1.099
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ga6_A_2211ga6   A221232NEGLDSNGKLWAEEEE-TTS-EEEbaexxaavxxbb
1m5q_1_231m5q   12435VQVVLSNGEVYKEEEEETTS-EEEbbbxbaavxbbb
1mgq_A_341mgq   A4051LKSFDLHMNLVLEEEE-TT--EEExabbbaavxbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ga6_A_2211ga6   A     GOLGLYCEROL N - 221
1ga6_A_2211ga6   A     GOLGLYCEROL E - 222
1m5q_1_231m5q   1     MSESELENOMETHIONINE L - 28
1m5q_1_231m5q   1     GOLGLYCEROL N - 30
1m5q_1_231m5q   1     GOLGLYCEROL E - 32
1m5q_1_231m5q   1     GOLGLYCEROL Y - 34
1m5q_1_231m5q   1     CDCADMIUM ION H - 39
1m5q_1_231m5q   1     GOLGLYCEROL H - 39

Clusters included in this Subclass
CLUSTER: HA.4.173