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Information on SUBCLASS 4.29.1
Subclass Accession number: 685
Subclass: 4.29.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0046914 (>50 %)  
SCOP : 50198 (>50 %)  50331 (>50 %)  
 Number of loops: 3

Average sequence ID (%) : 22.8 +/- 23.8
Average RMSD (Å) : 0.867 +/- 0.289

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: XhXccpXh
(φψ)-conformation: bbplgpbb
Pattern: x[AM][EN][V]x[FL][AE][ILV][AKQ][GN][GN][ENT]x[IY][LT]xx[IV][NST]
Conservation:-1.282-0.2720.7451.998-1.1690.370-0.1860.641-0.7171.1211.121-0.490-1.1690.041-0.054-0.915-1.3951.5370.075
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a9x_A_8241a9x   A825843LMNVQFAVKNNEVYLIEVNEEEEEEEE-SS-EEEEEEExbbbbbbbblvbxbxabbb
1gug_A_221gug   A2240TAEVVLEIAGGNKITSIISEEEEEEEEGGG-EEEEEEEbbbbbbxbpvvxbbbbbbx
1h9k_A_941h9k   A94112NAEVTLALQGGTEITSMVTEEEEEEEETTS-EEEEEEEbbbbbbbxxggxbbbbbbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a9x_A_8241a9x   A     MNMANGANESE (II) ION N - 827
1a9x_A_8241a9x   A     ADPADENOSINE-5'-DIPHOSPHATE Q - 829
1a9x_A_8241a9x   A     MNMANGANESE (II) ION Q - 829
1a9x_A_8241a9x   A     ADPADENOSINE-5'-DIPHOSPHATE A - 831
1a9x_A_8241a9x   A     ADPADENOSINE-5'-DIPHOSPHATE I - 840
1a9x_A_8241a9x   A     MNMANGANESE (II) ION I - 840
1a9x_A_8241a9x   A     ADPADENOSINE-5'-DIPHOSPHATE E - 841
1a9x_A_8241a9x   A     MNMANGANESE (II) ION E - 841
1a9x_A_8241a9x   A     ADPADENOSINE-5'-DIPHOSPHATE N - 843
1a9x_A_8241a9x   A     MNMANGANESE (II) ION N - 843
1gug_A_221gug   A     WO4TUNGSTATE(VI)ION T - 22
1gug_A_221gug   A     WO4TUNGSTATE(VI)ION A - 23
1gug_A_221gug   A     WO4TUNGSTATE(VI)ION I - 38
1gug_A_221gug   A     WO4TUNGSTATE(VI)ION I - 39
1gug_A_221gug   A     WO4TUNGSTATE(VI)ION S - 40
1h9k_A_941h9k   A     WO4TUNGSTATE(VI)ION N - 94
1h9k_A_941h9k   A     WO4TUNGSTATE(VI)ION M - 110
1h9k_A_941h9k   A     WO4TUNGSTATE(VI)ION V - 111
1h9k_A_941h9k   A     WO4TUNGSTATE(VI)ION T - 112
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gug_A_221gug   A T11TYPE 1 BINDING SITET - 22
1gug_A_221gug   A T22TYPE 2 BINDING SITES - 40
1h9k_A_941h9k   A WO1WO4 BINDING SITE FOR CHAIN A SYMMETRY RELATED SUBUNITS CONTRIBUTE TO THE BINDING SITEN - 94
1h9k_A_941h9k   A WO2WO4 BINDING SITE FOR CHAIN A SYMMETRY RELATED SUBUNITS CONTRIBUTE TO THE BINDING SITET - 112

Clusters included in this Subclass
CLUSTER: HA.4.162