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Information on SUBCLASS 8.2.1
Subclass Accession number: 6879
Subclass: 8.2.1 PSSM
Type: AR beta-beta link
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 25

Average sequence ID (%) : 52.7 +/- 26.9
Average RMSD (Å) : 0.296 +/- 0.151

Consensus geometry
d (Å): 15 delta (°): 45-90 theta (°): 45-90 rho (°): 0-45
Consensus Sequence: hhHRDhXhXNhh
(φψ)-conformation: bbagapbaaabb
Pattern: [cfilvy][acilmtv][hy][grt][d][ailv][akr][aps][adegkqrs][n][cfilv][alm][ilmvy]
Conservation:-0.549-0.7031.550-0.7801.759-0.200-0.558-0.589-1.0631.759-0.343-0.044-0.238
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1b6c_B_3281b6c   B329341IAHRDLKSKNILVEE-S--SGGGEEEbbavaxbaaabbb
1cm8_A_1491cm8   A149161IIHRDLKPGNLAVEE-----GGGEEExbavaxbaaabxb
1csn_*_1271csn   -127139LVYRDIKPDNFLIEE-----GGGEEEbbavaxbaaabbx
1fot_A_2061fot   A206218IIYRDLKPENILLEE-----GGGEEEbbavaxbaaabbb
1fvr_A_9601fvr   A960972FIHRDLAARNILVEE-S--SGGGEEExbagaxbaaabbx
1gjo_A_6221gjo   A622634CIHRDLAARNVLVEE-S---STTEEEbbavaxbaaabbb
1h1w_A_2011h1w   A201213IIHRDLKPENILLEE-S---GGGEEEbbavaxbaaabxb
1h26_C_1231h26   C123135VLHRDLKPQNLLIEE----SGGGEEEbxavaxbaaabbb
1h4l_A_1221h4l   A122134VLHRDLKPQNLLIEE-----GGGEEEbbavaxbaaabxb
1ia8_A_1261ia8   A126138ITHRDIKPENLLLEE-S--SGGGEEEbbavaxbaaabxb
1ir3_A_11281ir3   A11281140FVHRDLAARNCMVEE-S--SGGGEEEbbavaxbaaabbb
1j1b_A_1771j1b   A177189ICHRDIKPQNLLLEE-S--SGGGEEExbavaxbaaabxb
1jks_A_1351jks   A135147IAHFDLKPENIMLEE----SGGGEEEbxavaxbaaabbx
1m14_A_8091m14   A809821LVHRDLAARNVLVEE-S--SGGGEEEbbavaxbaaabbb
1m2r_A_1521m2r   A152164IMHRDVKPHNVMIEE----SGGGEEEbbavaxbaaabxb
1mq4_A_2521mq4   A252264VIHRDIKPENLLLEE-----GGGEEExbavaxbaaabbb
1nd4_A_1841nd4   A186198VTHGDACLPNIMVEE-SS--GGGEEExbagaxbaaabbb
1nxk_A_1821nxk   A182194IAHRDVKPENLLYEE-----GGGEEEbbavaxbaaabbx
1o6y_A_1341o6y   A134146IIHRDVKPANIMIEE----SGGGEEEbbavaxbaaabbb
1omw_A_3131omw   A313325VVYRDLKPANILLEE----SGGGEEEbxagaxbaaabbb
1phk_*_1451phk   -145157IVHRDLKPENILLEE-S--SGGGEEEbbavaxbaaabbb
1pkg_A_7881pkg   A788800CIHRDLAARNILLEE-S---GGGEEEbbavapbaaabxb
1pme_*_1451pme   -145157VLHRDLKPSNLLLEE-----GGGEEEbbavaxbaaabxb
1q8y_A_2901q8y   A290302IIHTDIKPENVLMEE-S--SGGGEEEbbavaxbaaabxb
1qpc_A_3601qpc   A360372YIHRDLRAANILVEE-S--SGGGEEEbbavaxbaaabbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1cm8_A_1491cm8   A     TPOPHOSPHOTHREONINE R - 152
1cm8_A_1491cm8   A     MGMAGNESIUM ION D - 153
1cm8_A_1491cm8   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER D - 153
1cm8_A_1491cm8   A     MGMAGNESIUM ION K - 155
1cm8_A_1491cm8   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER K - 155
1cm8_A_1491cm8   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER P - 156
1cm8_A_1491cm8   A     MGMAGNESIUM ION G - 157
1cm8_A_1491cm8   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER G - 157
1cm8_A_1491cm8   A     MGMAGNESIUM ION N - 158
1cm8_A_1491cm8   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER N - 158
1cm8_A_1491cm8   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER A - 160
1csn_*_1271csn   *     ATPADENOSINE-5'-TRIPHOSPHATE D - 131
1csn_*_1271csn   *     MGMAGNESIUM ION D - 131
1csn_*_1271csn   *     ATPADENOSINE-5'-TRIPHOSPHATE K - 133
1csn_*_1271csn   *     MGMAGNESIUM ION K - 133
1csn_*_1271csn   *     ATPADENOSINE-5'-TRIPHOSPHATE D - 135
1csn_*_1271csn   *     MGMAGNESIUM ION D - 135
1csn_*_1271csn   *     ATPADENOSINE-5'-TRIPHOSPHATE N - 136
1csn_*_1271csn   *     MGMAGNESIUM ION N - 136
1csn_*_1271csn   *     ATPADENOSINE-5'-TRIPHOSPHATE L - 138
1fot_A_2061fot   A     TPOPHOSPHOTHREONINE R - 209
1h1w_A_2011h1w   A     SEPPHOSPHOSERINE R - 204
1h1w_A_2011h1w   A     ATPADENOSINE-5'-TRIPHOSPHATE D - 205
1h1w_A_2011h1w   A     ATPADENOSINE-5'-TRIPHOSPHATE K - 207
1h1w_A_2011h1w   A     ATPADENOSINE-5'-TRIPHOSPHATE E - 209
1h1w_A_2011h1w   A     ATPADENOSINE-5'-TRIPHOSPHATE N - 210
1h1w_A_2011h1w   A     ATPADENOSINE-5'-TRIPHOSPHATE L - 212
1h26_C_1231h26   C     TPOPHOSPHOTHREONINE R - 126
1ir3_A_11281ir3   A     PTRO-PHOSPHOTYROSINE F - 1128
1ir3_A_11281ir3   A     PTRO-PHOSPHOTYROSINE V - 1129
1ir3_A_11281ir3   A     PTRO-PHOSPHOTYROSINE R - 1131
1ir3_A_11281ir3   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER D - 1132
1ir3_A_11281ir3   A     MGMAGNESIUM ION D - 1132
1ir3_A_11281ir3   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER R - 1136
1ir3_A_11281ir3   A     MGMAGNESIUM ION R - 1136
1ir3_A_11281ir3   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER N - 1137
1ir3_A_11281ir3   A     MGMAGNESIUM ION N - 1137
1ir3_A_11281ir3   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER M - 1139
1ir3_A_11281ir3   A     MGMAGNESIUM ION M - 1139
1j1b_A_1771j1b   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER D - 181
1j1b_A_1771j1b   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER K - 183
1j1b_A_1771j1b   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER Q - 185
1j1b_A_1771j1b   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER N - 186
1j1b_A_1771j1b   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER L - 188
1m2r_A_1521m2r   A     MNY5,8-DI-AMINO-1,4-DIHYDROXY-ANTHRAQUINONE H - 160
1m2r_A_1521m2r   A     MNY5,8-DI-AMINO-1,4-DIHYDROXY-ANTHRAQUINONE M - 163
1mq4_A_2521mq4   A     PO4PHOSPHATE ION R - 255
1mq4_A_2521mq4   A     MGMAGNESIUM ION D - 256
1mq4_A_2521mq4   A     ADPADENOSINE-5'-DIPHOSPHATE D - 256
1mq4_A_2521mq4   A     MGMAGNESIUM ION K - 258
1mq4_A_2521mq4   A     MGMAGNESIUM ION E - 260
1mq4_A_2521mq4   A     ADPADENOSINE-5'-DIPHOSPHATE E - 260
1mq4_A_2521mq4   A     MGMAGNESIUM ION N - 261
1mq4_A_2521mq4   A     ADPADENOSINE-5'-DIPHOSPHATE N - 261
1mq4_A_2521mq4   A     ADPADENOSINE-5'-DIPHOSPHATE L - 263
1nd4_A_1841nd4   A     MGMAGNESIUM ION D - 190
1nd4_A_1841nd4   A     KANKANAMYCIN A D - 190
1nd4_A_1841nd4   A     MGMAGNESIUM ION C - 192
1nd4_A_1841nd4   A     KANKANAMYCIN A C - 192
1nd4_A_1841nd4   A     MGMAGNESIUM ION P - 194
1nd4_A_1841nd4   A     KANKANAMYCIN A P - 194
1nd4_A_1841nd4   A     MGMAGNESIUM ION N - 195
1nd4_A_1841nd4   A     KANKANAMYCIN A N - 195
1nd4_A_1841nd4   A     ACTACETATE ION M - 197
1nxk_A_1821nxk   A     STUSTAUROSPORINE K - 188
1nxk_A_1821nxk   A     STUSTAUROSPORINE E - 190
1nxk_A_1821nxk   A     STUSTAUROSPORINE N - 191
1nxk_A_1821nxk   A     STUSTAUROSPORINE L - 192
1nxk_A_1821nxk   A     STUSTAUROSPORINE L - 193
1o6y_A_1341o6y   A     ACPPHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER D - 138
1o6y_A_1341o6y   A     MGMAGNESIUM ION D - 138
1o6y_A_1341o6y   A     MGMAGNESIUM ION K - 140
1o6y_A_1341o6y   A     ACPPHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER A - 142
1o6y_A_1341o6y   A     MGMAGNESIUM ION A - 142
1o6y_A_1341o6y   A     ACPPHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER N - 143
1o6y_A_1341o6y   A     MGMAGNESIUM ION N - 143
1o6y_A_1341o6y   A     ACPPHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER M - 145
1phk_*_1451phk   *     ATPADENOSINE-5'-TRIPHOSPHATE D - 149
1phk_*_1451phk   *     MNMANGANESE (II) ION D - 149
1phk_*_1451phk   *     ATPADENOSINE-5'-TRIPHOSPHATE K - 151
1phk_*_1451phk   *     MNMANGANESE (II) ION K - 151
1phk_*_1451phk   *     ATPADENOSINE-5'-TRIPHOSPHATE E - 153
1phk_*_1451phk   *     MNMANGANESE (II) ION E - 153
1phk_*_1451phk   *     ATPADENOSINE-5'-TRIPHOSPHATE N - 154
1phk_*_1451phk   *     MNMANGANESE (II) ION N - 154
1phk_*_1451phk   *     ATPADENOSINE-5'-TRIPHOSPHATE L - 156
1pkg_A_7881pkg   A     PTRO-PHOSPHOTYROSINE D - 792
1pkg_A_7881pkg   A     MGMAGNESIUM ION D - 792
1pkg_A_7881pkg   A     ADPADENOSINE-5'-DIPHOSPHATE D - 792
1pkg_A_7881pkg   A     PTRO-PHOSPHOTYROSINE R - 796
1pkg_A_7881pkg   A     MGMAGNESIUM ION R - 796
1pkg_A_7881pkg   A     ADPADENOSINE-5'-DIPHOSPHATE R - 796
1pkg_A_7881pkg   A     PTRO-PHOSPHOTYROSINE N - 797
1pkg_A_7881pkg   A     MGMAGNESIUM ION N - 797
1pkg_A_7881pkg   A     ADPADENOSINE-5'-DIPHOSPHATE N - 797
1pkg_A_7881pkg   A     ADPADENOSINE-5'-DIPHOSPHATE I - 798
1pkg_A_7881pkg   A     ADPADENOSINE-5'-DIPHOSPHATE L - 799
1pme_*_1451pme   *     5774-[5-(4-FLUORO-PHENYL)-2-[4-METHANESULFINYL-PHENYL]-3H -IMIDAZOL-4-YL]-PYRIDINE D - 149
1pme_*_1451pme   *     5774-[5-(4-FLUORO-PHENYL)-2-[4-METHANESULFINYL-PHENYL]-3H -IMIDAZOL-4-YL]-PYRIDINE K - 151
1pme_*_1451pme   *     5774-[5-(4-FLUORO-PHENYL)-2-[4-METHANESULFINYL-PHENYL]-3H -IMIDAZOL-4-YL]-PYRIDINE S - 153
1pme_*_1451pme   *     5774-[5-(4-FLUORO-PHENYL)-2-[4-METHANESULFINYL-PHENYL]-3H -IMIDAZOL-4-YL]-PYRIDINE N - 154
1pme_*_1451pme   *     5774-[5-(4-FLUORO-PHENYL)-2-[4-METHANESULFINYL-PHENYL]-3H -IMIDAZOL-4-YL]-PYRIDINE L - 156
1pme_*_1451pme   *     CMES,S-(2-HYDROXYETHYL)THIOCYSTEINE L - 157
1q8y_A_2901q8y   A     MGMAGNESIUM ION D - 294
1q8y_A_2901q8y   A     MGMAGNESIUM ION K - 296
1q8y_A_2901q8y   A     MGMAGNESIUM ION E - 298
1q8y_A_2901q8y   A     ADPADENOSINE-5'-DIPHOSPHATE E - 298
1q8y_A_2901q8y   A     MGMAGNESIUM ION N - 299
1q8y_A_2901q8y   A     ADPADENOSINE-5'-DIPHOSPHATE N - 299
1q8y_A_2901q8y   A     ADPADENOSINE-5'-DIPHOSPHATE L - 301
1qpc_A_3601qpc   A     PTRO-PHOSPHOTYROSINE I - 361
1qpc_A_3601qpc   A     PTRO-PHOSPHOTYROSINE R - 363
1qpc_A_3601qpc   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER A - 368
1qpc_A_3601qpc   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER N - 369
1qpc_A_3601qpc   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER L - 371
1qpc_A_3601qpc   A     EDO1,2-ETHANEDIOL L - 371
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1h1w_A_2011h1w   A AC1SEP BINDING SITE FOR CHAIN AR - 204
1o6y_A_1341o6y   A MG1MG BINDING SITE FOR CHAIN AN - 143

Clusters included in this Subclass
CLUSTER: AR.7.1