ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 8.3.1

Subclass Accession number: 6880
Subclass: 8.3.1

Type: AR beta-beta link
DB: ArchDB-EC

Image coordinates:

Consensus coordinates:

Number of loops: 7

Average sequence ID (%) : 31.0 +/- 32.1
Average RMSD (Å) : 0.671 +/- 0.304

Consensus geometry

d (Å): 19

delta (°): 0-45

theta (°): 45-90

rho (°): 90-135

Consensus Sequence:	hhXhXXpXXXph
(φψ)-conformation:	bbpppaaappbb

Pattern:	x	[FLVW]	[FPY]	[aeq]	[CILTY]	[PT]	[PRST]	[DESY]	[EL]	x	x	[DE]	[IV]	[DEPT]
Conservation:	-0.597	-0.268	0.048	-0.482	-0.786	1.482	-0.459	-0.649	-0.407	-0.430	-1.146	1.990	1.804	-0.100

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1d0c_A_303	1d0c	A	303	316	ELFVLPPELVLEVP	EEE---GGGS-EEE	bbbxxxaaabxbbx
1eu1_A_471	1eu1	A	472	485	VLPATTSYERNDIE	EEEB--GGGS-EEE	bbxxxxaaabbbbb
1m7v_A_179	1m7v	A	179	192	VWYELPRSLVIEVP	EEE---TTT--EEE	bbbxxxaaaxxbbx
1mjt_A_170	1mjt	A	170	183	KFYEYPTSLIKEVP	EEE---GGGS-EEE	bbbxxxaaaxxbbx
1nos_*_311	1nos	-	311	324	EVFEIPPDLVLEVT	EEE---GGG--EEE	bxbxxpaaaxxbbx
1om4_A_532	1om4	A	532	545	ELFQIPPELVLEVP	EEE---GGG--EEE	bxbxppaaaxxbbx
1tmo_*_480	1tmo	-	481	494	VLPACTTYERNDID	EEEB--GGGS-EEE	bbwbxxaaabbbbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1eu1_A_471	1eu1	A	MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE	A - 475
1eu1_A_471	1eu1	A	MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE	T - 476
1eu1_A_471	1eu1	A	MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE	T - 477
1eu1_A_471	1eu1	A	MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE	S - 478
1eu1_A_471	1eu1	A	MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE	R - 481
1tmo_*_480	1tmo	*	2MDGUANYLATE-O'-PHOSPHORIC ACID MONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,5,6,7,8A,9,10,10A-OCTAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL) ESTER	L - 482
1tmo_*_480	1tmo	*	2MDGUANYLATE-O'-PHOSPHORIC ACID MONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,5,6,7,8A,9,10,10A-OCTAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL) ESTER	A - 484
1tmo_*_480	1tmo	*	2MDGUANYLATE-O'-PHOSPHORIC ACID MONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,5,6,7,8A,9,10,10A-OCTAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL) ESTER	C - 485
1tmo_*_480	1tmo	*	2MDGUANYLATE-O'-PHOSPHORIC ACID MONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,5,6,7,8A,9,10,10A-OCTAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL) ESTER	T - 487
1tmo_*_480	1tmo	*	2MDGUANYLATE-O'-PHOSPHORIC ACID MONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,5,6,7,8A,9,10,10A-OCTAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL) ESTER	R - 490

Clusters included in this Subclass

CLUSTER: AR.7.8

CLUSTER: AR.9.9