ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 16.1.1

Subclass Accession number: 6936
Subclass: 16.1.1

PSSM

Type: AR beta-beta link
DB: ArchDB-EC

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 13

Average sequence ID (%) : 68.9 +/- 21.6
Average RMSD (Å) : 0.377 +/- 0.073

Consensus geometry

d (Å): 13

delta (°): 90-135

theta (°): 45-90

rho (°): 315-360

Consensus Sequence:	CAGhhXGGXDpCpGDSGGPh
(φψ)-conformation:	bbebaaegbbpbpgapgppb

Pattern:	[mt]	[FILMV]	[C]	[AV]	[G]	[fivy]	x	[aegpqs]	[G]	[GK]	[ikv]	[D]	[ST]	[C]	[HMQR]	[dg]	[D]	[S]	[G]	[G]	[P]	[HILV]	[imv]
Conservation:	-0.790	-0.690	1.889	-0.477	0.847	-0.934	-1.323	-1.144	0.847	-0.310	-1.052	0.847	-0.285	1.889	-0.717	-0.858	0.847	0.151	0.847	0.847	1.194	-0.849	-0.774

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1a0j_A_180	1a0j	A	180	202	MFCAGFMEGGKDSCQGDSGGPVV	EEEES-TT-S-B--TT-TT-EEE	bbbbebaaegbbxbpvapvxwbb
1ao5_A_180	1ao5	A	180	202	MLCAGEMGGGKDTCRDDSGGPLI	EEEEE-TT-S-B--TT-TT-EEE	bbbbebaaegbexbpvapgxxbb
1bqy_A_180	1bqy	A	180	202	TLCAGILQGGRDTCHFDSGGPLI	EEEEE-TT-S-B--TT-TT-EEE	bbbbebaaevbbxbpvapvxxbb
1eax_A_180	1eax	A	180	202	MMCVGFLSGGVDSCQGDSGGPLS	EEEEE-TT-SSB--TT-TT-EEE	bbxbebaaegbbxbpvapgxxxb
1ekb_B_180	1ekb	B	180	202	MVCAGYEAGGVDSCQGDSGGPLM	EEEE--TT---B--TT-TT-EEE	bbbbexaaegbbxbpvapgxxbb
1f7z_A_180	1f7z	A	180	202	MVCVGFLEGGKDSCQGDSGGPVV	EEEES-TT-S-B--TT-TT-EEE	bbxbebaaegbbxbpgapvxxbb
1fiz_A_180	1fiz	A	180	202	NVCAGYPRGKIDTCQGDSGGPLM	EEEEE-TT-S-B--TT-TT-EEE	bbbbebaaegbbxbpvapvxxbb
1fni_A_180	1fni	A	180	202	MICVGFLQGGKDSCQGDSGGPVV	EEEES-TTSS-B--TTTTT-EEE	bbxbebaaegbbxbpvapvxxbb
1hj9_A_180	1hj9	A	180	202	MFCAGYLEGGKDSCQGDSGGPVV	EEEES-TTSS-B--TT-TT-EEE	bbxbebaaevbbxbpvapvxxbb
1pq7_A_178	1pq7	A	178	200	MFCAGVSSGGKDSCQGDSGGPIV	EEEE--TT---B--TT-TT-EEE	bbbbebaaevbbxbxvapgxxbb
1rfn_A_180	1rfn	A	180	202	MFCAGFHEGGRDSCQGDSGGPHV	EEEES-SS-S-B--TT-TT-EEE	bbbbebaaegbbxbxgapgxxbb
1trn_A_180	1trn	A	180	202	MFCVGFLEGGKDSCQGDSGGPVV	EEEES-TT-SSB--TT-TT-EEE	bbbbebaaegbbxbpgapvxxbb
2pka_B_180	2pka	B	180	202	MLCAGYLPGGKDTCMGDSGGPLI	EEEEE-TTSS----TT-TT-EEE	bbbbebaaegbbxbpgapvxxbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1fni_A_180	1fni	A	EDO1,2-ETHANEDIOL	M - 180
1pq7_A_178	1pq7	A	SULSULFATE ANION	G - 182
1pq7_A_178	1pq7	A	SULSULFATE ANION	V - 183
1pq7_A_178	1pq7	A	SULSULFATE ANION	S - 184
1pq7_A_178	1pq7	A	SULSULFATE ANION	S - 185
1pq7_A_178	1pq7	A	SULSULFATE ANION	G - 186
1pq7_A_178	1pq7	A	ARGARGININE	D - 189
1pq7_A_178	1pq7	A	ARGARGININE	S - 190
1pq7_A_178	1pq7	A	ARGARGININE	C - 191
1pq7_A_178	1pq7	A	ARGARGININE	Q - 192
1pq7_A_178	1pq7	A	ARGARGININE	G - 193
1pq7_A_178	1pq7	A	ARGARGININE	D - 194
1pq7_A_178	1pq7	A	ARGARGININE	S - 195
1pq7_A_178	1pq7	A	ARGARGININE	G - 196

Clusters included in this Subclass

CLUSTER: AR.15.0