Logo
Information on SUBCLASS 0.1.7
Subclass Accession number: 7
Subclass: 0.1.7 PSSM
Type: HE alpha-beta
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 16

Average sequence ID (%) : 6.1 +/- 10.3
Average RMSD (Å) : 0.581 +/- 0.128

Consensus geometry
d (Å): 5 delta (°): 45-90 theta (°): 0-45 rho (°): 135-180
Consensus Sequence: XXXX
(φψ)-conformation: aabb
Pattern: xxxxx[ckrst]x
Conservation:-0.867-0.418-0.3381.478-0.6171.407-0.645
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1aop_*_4261aop   -426432PQRENSMHHHHTEEaaaaabb
1euh_A_4571euh   A460466SIEAMTTHHHHTEEaaaaabb
1g9g_A_5151g9g   A528534MWNNYSDHHHHSEEaaaaaxb
1hc7_A_3771hc7   A399405FREDHTRHHHHTEEaaaaabb
1hsj_A_911hsj   A9399TWDAVRYHHHHTEEaaaaabb
1iat_A_351iat   A3541RFNHFSLHHHHTEEaaaaabb
1kre_A_2851kre   A298304TIKHLKSHHHHTEEaaaaapb
1lf6_A_5501lf6   A559565VDSTIKVHHHHSEEaaaaabb
1lp8_A_2091lp8   A215221AIFGDCKHHHHSEEaaaaabb
1nd7_A_8091nd7   A811817DWQRNTVHHHHTEEaaaaabb
1nxc_A_4331nxc   A446452IETHLIRHHHHTEEaaaaaxb
1nxc_A_5641nxc   A577583LESHCRVHHHHTEEaaaaaxb
1o75_A_2451o75   A250256DYVMNFNHHHTTEEaaaaaxa
1pzx_A_1431pzx   A152158SYCRHMEHHHHTEEaaaaaxb
1un8_A_1721un8   A181187YAASNTFHHHHTEEaaaaabb
1zin_*_1171zin   -122128ERLTGRRHHHHTEEaaaaaxb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1aop_*_4261aop   *     SRMSIROHEME A - 433
1nxc_A_5641nxc   A     NAGN-ACETYL-D-GLUCOSAMINE W - 569
1o75_A_2451o75   A     PDX2,3-DI-O-SULFO-ALPHA-D-GLUCOPYRANOSE F - 248
1o75_A_2451o75   A     XEXENON Y - 260
1pzx_A_1431pzx   A     PLMPALMITIC ACID H - 159
1pzx_A_1431pzx   A     PLMPALMITIC ACID F - 161
1zin_*_1171zin   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE R - 123
1zin_*_1171zin   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE L - 124
1zin_*_1171zin   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE G - 126
1zin_*_1171zin   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE R - 127
1zin_*_1171zin   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE R - 128
1zin_*_1171zin   *     ZNZINC ION C - 130
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1o75_A_2451o75   A AC1XE BINDING SITE FOR CHAIN AY - 260

Clusters included in this Subclass
CLUSTER: HE.2.18