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Information on SUBCLASS 1.1.9
Subclass Accession number: 70
Subclass: 1.1.9 PSSM
Type: HE alpha-beta
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 22

Average sequence ID (%) : 13.1 +/- 16.4
Average RMSD (Å) : 0.500 +/- 0.188

Consensus geometry
d (Å): 7 delta (°): 90-135 theta (°): 135-180 rho (°): 135-180
Consensus Sequence: pXchX
(φψ)-conformation: aalbb
Pattern: x[adeknq][dehkqrty]x[EGKNQR][filmvy]xx
Conservation:-0.9590.2520.219-0.6421.2741.137-1.281-1.000
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1brw_A_1361brw   A143150VNENGIAIHHHHSEEEaaaavbbb
1bt3_A_3261bt3   A326333NQKMGYKYHHHHTEEEaaaavbbb
1bw0_A_3611bw0   A369375LEEENVQ.HHHH-EE.aaaalbb.
1g8t_A_791g8t   A8087NAALKVDRHHHH-EEEaaaalbbx
1jce_A_1841jce   A191197RETYRVA.HHHH-EE.aaaavbx.
1jj2_R_121jj2   R1825MDFQNKLQHHHH-EEEaaaalbbb
1jms_A_4541jms   A465472THERKMMLHHHH-EEEaaaalbbb
1k2e_A_381k2e   A4754EEETGIVVHHHHSEEEaaaavxxb
1khd_A_1471khd   A154161LDDLNVCFHHHHSEEEaaaavbbb
1kob_A_3591kob   A359366PQEYQIYDHHHHTEEEaaaalbbx
1lfw_A_2321lfw   A243250LADKELDGHHHHT-EEaaaavbbe
1lla_*_2661lla   -279286SIHLGYVIHHHHTEEEaaaavbbb
1lo7_A_471lo7   A5158VVERGIVGHHHH-EEEaaaavxae
1m2o_A_31m2o   A714EDINGVRFHHHHSEEEaaaavbbx
1o4s_A_3251o4s   A333339LEEKKVA.HHHH-EE.aaaalbb.
1o8a_A_4811o8a   A490496LKYQGLC.HHHH-EE.aaaavbb.
1pot_*_421pot   -4754TKETGIKVHHHH-EEEaaaavxxb
1qh4_A_3081qh4   A312319LKRLRLQKHHHHTEEEaaaalbbb
1v8g_A_1331v8g   A140147IEELGFGFHHHHSEEEaaaavbbb
1vjo_A_3281vjo   A336342LNEHNIE.HHHH-EE.aaaalbx.
2reb_*_1662reb   -182189LKQSNTLLHHHHT-EEaaaavxxb
8abp_*_158abp   -2835GKDLGFEVHHHHTEEEaaaavbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1g8t_A_791g8t   A     SULSULFATE ANION D - 86
1g8t_A_791g8t   A     SULSULFATE ANION R - 87
1g8t_A_791g8t   A     MO5MAGNESIUM ION, 5 WATERS COORDINATED R - 87
1g8t_A_791g8t   A     SULSULFATE ANION G - 88
1g8t_A_791g8t   A     MO5MAGNESIUM ION, 5 WATERS COORDINATED G - 88
1g8t_A_791g8t   A     SULSULFATE ANION H - 89
1g8t_A_791g8t   A     MO5MAGNESIUM ION, 5 WATERS COORDINATED H - 89
1jce_A_1841jce   A     MSESELENOMETHIONINE E - 184
1jce_A_1841jce   A     MSESELENOMETHIONINE A - 185
1jce_A_1841jce   A     MSESELENOMETHIONINE I - 186
1jce_A_1841jce   A     MSESELENOMETHIONINE V - 187
1k2e_A_381k2e   A     CRYPROPANE-1,2,3-TRIOL E - 49
1lo7_A_471lo7   A     4CO4-HYDROXYPHENACYL COENZYME A W - 47
1lo7_A_471lo7   A     4CO4-HYDROXYPHENACYL COENZYME A V - 57
1lo7_A_471lo7   A     4CO4-HYDROXYPHENACYL COENZYME A G - 58
8abp_*_158abp   *     GLAALPHA D-GALACTOSE W - 16
8abp_*_158abp   *     GLBBETA-D-GALACTOSE W - 16
8abp_*_158abp   *     GLAALPHA D-GALACTOSE F - 17
8abp_*_158abp   *     GLBBETA-D-GALACTOSE F - 17
8abp_*_158abp   *     GLAALPHA D-GALACTOSE E - 20
8abp_*_158abp   *     GLBBETA-D-GALACTOSE E - 20
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1o8a_A_4811o8a   A CL1CL BINDING SITE FOR CHAIN AW - 485
1o8a_A_4811o8a   A CL1CL BINDING SITE FOR CHAIN AW - 486
1o8a_A_4811o8a   A CL1CL BINDING SITE FOR CHAIN AR - 489

Clusters included in this Subclass
CLUSTER: HE.0.3
CLUSTER: HE.1.9