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Information on SUBCLASS 1.1.10
Subclass Accession number: 7026
Subclass: 1.1.10 PSSM
Type: EH beta-alpha
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 31

Average sequence ID (%) : 10.2 +/- 13.0
Average RMSD (Å) : 0.419 +/- 0.147

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 135-180 rho (°): 180-225
Consensus Sequence: hhXXX
(φψ)-conformation: bbpaa
Pattern: x[afilvwy][acfgilmpvy][acgilptv][dehknpqrst]xxxx[dehknpqrs]x[afgilvwy]
Conservation:-0.1752.394-0.7360.380-0.446-0.179-0.954-1.255-0.5091.2420.1790.060
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ad3_A_2481ad3   A248259YILCDPSIQNQIEEEE-GGGHHHHbbbbxaaaaaaa
1amu_A_1391amu   A139150MLLTQKHLVHLIEEEE-GGGHHHHbbxbbaaaaaaa
1ati_A_2341ati   A241252EYFVRPGEDEYWEEEE-GGGHHHHbxxbxaaaaaaa
1b93_A_131b93   A1526ALVAHDHCKQMLEEEE-GGGHHHHxbbbxaaaaaaa
1chd_*_3261chd   -326336.EVVDLSQVSQQ.EEE-GGGHHHH.bbbxaaaaaaa
1cjw_A_1551cjw   A157168VLMCEDALVPFYEEEE-GGGHHHHbbbbxaaaaaaa
1cli_A_3021cli   A305316IIALPAPEVDKAEEEE-GGGHHHHbbbbwaaNaaaa
1evl_A_3781evl   A385396HIFCTEEQIRDEEEEE-GGGHHHHbbxbxaaaaaaa
1fi4_A_3071fi4   A308319VLYYLAENESKLEEEE-GGGHHHHbbxbxaaaaaaa
1g5h_D_2051g5h   D214225VWFTPTRTSSQWEEEE-GGGHHHHbbbbxaaaaaaa
1h5r_A_491h5r   A5364LIISTPQDTPRFEEEE-TTTHHHHbbbbxaaaaaaa
1h72_C_2651h72   C266277IAFPKEEFIDEVEEEE-GGGHHHHbbbxxaaaaaaa
1hye_A_281hye   A3041VLIGREHSINKLEEEE-GGGHHHHbbbbxaaaaaaa
1i6k_A_1401i6k   A140151IVPVGEDQKQHIEEE--GGGHHHHbbxbxaaaaaaa
1jv1_A_1621jv1   A163174YIMTSGRTMESTEEEE-TTTHHHHxbxbbaaNaaaa
1kbl_A_8511kbl   A851862YVSCSPFRVPIAEEEE-GGGHHHHbbbbxaaaaaaa
1kol_A_3641kol   A364375VQVISLDDAPRGEEEE-GGGHHHHpbxbxaaaaaaa
1lbv_A_2361lbv   A236247IVAANEKLHPKLEEEE-TTTHHHHbbbbxaaaaaaa
1lci_*_1251lci   -125136VVFVSKKGLQKIEEEE-GGGHHHHbbxbxaaaaaaa
1lk5_A_1361lk5   A137148PIEVIPQAWKAIEEEE-GGGHHHHwbxbpaaaaaaa
1m0s_A_1321m0s   A133144PVEVIPMARSQVEEEE-GGGHHHHwbxbpaaaaaaa
1m6j_A_401m6j   A4354IVGVPFIYIPKVEEEE-GGGHHHHbbxbwaaaaaaa
1msw_D_8131msw   D813824SFGTIPADAANLEEEE-GGGHHHHbbbbxaaaaaaa
1mzh_A_1361mzh   A136147AVCVNPYHVKLAEEEE-GGGHHHHbbbbxaaaaaaa
1nyr_A_3801nyr   A387398HIFVRPDQIKEEEEEE-GGGHHHHbxbbxaaaaaaa
1o0y_A_631o0y   A6374GVCVNPCYVKLAEEEE-GGGHHHHbbbbxaaaaaaa
1ofg_A_1011ofg   A103114YIILPNSLHAEFEE-S-GGGHHHHbxaxxaaaaaaa
1p0f_A_13441p0f   A13451356STKLTLDQINKAEEEE-GGGHHHHabbbbaaaaaaa
1tmh_A_391tmh   A4152AIAPPEMYIDMAEEE--GGGHHHHbbbxpaaaaaaa
2btm_A_362btm   A3849VVCAPFLFLDRLEEEE-GGGHHHHbbbbwaaaaaaa
7mdh_A_787mdh   A8192KLLGSERSFQALEEE--GGGHHHHbxbbxaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1b93_A_131b93   A     FMTFORMIC ACID L - 16
1b93_A_131b93   A     FMTFORMIC ACID V - 17
1b93_A_131b93   A     FMTFORMIC ACID A - 18
1b93_A_131b93   A     FMTFORMIC ACID H - 19
1b93_A_131b93   A     FMTFORMIC ACID D - 20
1b93_A_131b93   A     FMTFORMIC ACID K - 23
1b93_A_131b93   A     FMTFORMIC ACID L - 26
1cjw_A_1551cjw   A     COTCOA-S-ACETYL TRYPTAMINE L - 158
1cjw_A_1551cjw   A     COTCOA-S-ACETYL TRYPTAMINE M - 159
1cjw_A_1551cjw   A     COTCOA-S-ACETYL TRYPTAMINE C - 160
1cjw_A_1551cjw   A     COTCOA-S-ACETYL TRYPTAMINE E - 161
1cjw_A_1551cjw   A     COTCOA-S-ACETYL TRYPTAMINE A - 163
1cjw_A_1551cjw   A     COTCOA-S-ACETYL TRYPTAMINE L - 164
1cjw_A_1551cjw   A     COTCOA-S-ACETYL TRYPTAMINE F - 167
1cjw_A_1551cjw   A     COTCOA-S-ACETYL TRYPTAMINE Y - 168
1evl_A_3781evl   A     TSB5'-O-(N-(L-THREONYL)-SULFAMOYL)ADENOSINE F - 379
1evl_A_3781evl   A     ZNZINC ION Q - 381
1evl_A_3781evl   A     TSB5'-O-(N-(L-THREONYL)-SULFAMOYL)ADENOSINE Q - 381
1evl_A_3781evl   A     ZNZINC ION D - 383
1evl_A_3781evl   A     TSB5'-O-(N-(L-THREONYL)-SULFAMOYL)ADENOSINE D - 383
1evl_A_3781evl   A     ZNZINC ION A - 384
1evl_A_3781evl   A     TSB5'-O-(N-(L-THREONYL)-SULFAMOYL)ADENOSINE A - 384
1evl_A_3781evl   A     ZNZINC ION H - 385
1evl_A_3781evl   A     TSB5'-O-(N-(L-THREONYL)-SULFAMOYL)ADENOSINE H - 385
1fi4_A_3071fi4   A     MSESELENOMETHIONINE Y - 310
1fi4_A_3071fi4   A     MSESELENOMETHIONINE Y - 311
1fi4_A_3071fi4   A     MSESELENOMETHIONINE L - 312
1fi4_A_3071fi4   A     MSESELENOMETHIONINE A - 313
1g5h_D_2051g5h   D     GOLGLYCEROL E - 207
1g5h_D_2051g5h   D     GOLGLYCEROL K - 208
1g5h_D_2051g5h   D     GOLGLYCEROL T - 209
1g5h_D_2051g5h   D     MSESELENOMETHIONINE L - 213
1g5h_D_2051g5h   D     MSESELENOMETHIONINE W - 229
1g5h_D_2051g5h   D     MSESELENOMETHIONINE H - 232
1g5h_D_2051g5h   D     MSESELENOMETHIONINE R - 233
1g5h_D_2051g5h   D     MSESELENOMETHIONINE W - 236
1g5h_D_2051g5h   D     MSESELENOMETHIONINE R - 238
1h5r_A_491h5r   A     THMTHYMIDINE I - 55
1hye_A_281hye   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE I - 32
1hye_A_281hye   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE G - 33
1hye_A_281hye   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE R - 34
1hye_A_281hye   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE E - 35
1hye_A_281hye   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE H - 36
1hye_A_281hye   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE S - 37
1i6k_A_1401i6k   A     MSESELENOMETHIONINE V - 141
1i6k_A_1401i6k   A     TYMTRYPTOPHANYL-5'AMP V - 141
1i6k_A_1401i6k   A     TYMTRYPTOPHANYL-5'AMP P - 142
1i6k_A_1401i6k   A     MSESELENOMETHIONINE V - 143
1i6k_A_1401i6k   A     TYMTRYPTOPHANYL-5'AMP V - 143
1i6k_A_1401i6k   A     TYMTRYPTOPHANYL-5'AMP G - 144
1i6k_A_1401i6k   A     TYMTRYPTOPHANYL-5'AMP E - 145
1i6k_A_1401i6k   A     TYMTRYPTOPHANYL-5'AMP D - 146
1i6k_A_1401i6k   A     MSESELENOMETHIONINE Q - 147
1i6k_A_1401i6k   A     TYMTRYPTOPHANYL-5'AMP Q - 147
1i6k_A_1401i6k   A     MSESELENOMETHIONINE Q - 149
1i6k_A_1401i6k   A     MSESELENOMETHIONINE H - 150
1i6k_A_1401i6k   A     TYMTRYPTOPHANYL-5'AMP H - 150
1i6k_A_1401i6k   A     MSESELENOMETHIONINE I - 151
1i6k_A_1401i6k   A     TYMTRYPTOPHANYL-5'AMP I - 151
1i6k_A_1401i6k   A     MSESELENOMETHIONINE L - 153
1i6k_A_1401i6k   A     MSESELENOMETHIONINE T - 154
1i6k_A_1401i6k   A     MSESELENOMETHIONINE F - 161
1i6k_A_1401i6k   A     MSESELENOMETHIONINE Y - 165
1jv1_A_1621jv1   A     UD1URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE M - 165
1jv1_A_1621jv1   A     UD1URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE S - 167
1kol_A_3641kol   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE F - 379
1nyr_A_3801nyr   A     ATPADENOSINE-5'-TRIPHOSPHATE M - 381
1nyr_A_3801nyr   A     ATPADENOSINE-5'-TRIPHOSPHATE L - 383
1nyr_A_3801nyr   A     THRTHREONINE L - 383
1nyr_A_3801nyr   A     ZNZINC ION D - 385
1nyr_A_3801nyr   A     THRTHREONINE D - 385
1nyr_A_3801nyr   A     ZNZINC ION S - 386
1nyr_A_3801nyr   A     THRTHREONINE S - 386
1nyr_A_3801nyr   A     ZNZINC ION H - 387
1nyr_A_3801nyr   A     THRTHREONINE H - 387
1ofg_A_1011ofg   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Y - 103
1ofg_A_1011ofg   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE I - 104
1ofg_A_1011ofg   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE I - 105
1ofg_A_1011ofg   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE L - 106
1ofg_A_1011ofg   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE P - 107
1ofg_A_1011ofg   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE N - 108
1ofg_A_1011ofg   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE L - 110
1ofg_A_1011ofg   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE H - 111
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1ati_A_2341ati   A SA1THESE RESIDUES ARE FOUND TO BE RESPONSIBLE FOR ON THE BASIS OF MODELLING GLYCYL-AMP INTO THE ACTIVE SITE OF GLYCYL-TRNA SYNTHETASE.F - 235
1ati_A_2341ati   A SA1THESE RESIDUES ARE FOUND TO BE RESPONSIBLE FOR ON THE BASIS OF MODELLING GLYCYL-AMP INTO THE ACTIVE SITE OF GLYCYL-TRNA SYNTHETASE.Q - 237
1ati_A_2341ati   A SA1THESE RESIDUES ARE FOUND TO BE RESPONSIBLE FOR ON THE BASIS OF MODELLING GLYCYL-AMP INTO THE ACTIVE SITE OF GLYCYL-TRNA SYNTHETASE.E - 239
1ati_A_2341ati   A SA1THESE RESIDUES ARE FOUND TO BE RESPONSIBLE FOR ON THE BASIS OF MODELLING GLYCYL-AMP INTO THE ACTIVE SITE OF GLYCYL-TRNA SYNTHETASE.E - 241

Clusters included in this Subclass
CLUSTER: EH.3.17
CLUSTER: EH.4.4
CLUSTER: EH.5.2