Information on SUBCLASS 5.3.2 |
Subclass Accession number: 711
Subclass: 5.3.2 Type: HA beta-beta hairpin DB: ArchDB40 Image coordinates: Consensus coordinates: |
Number of loops: 13 Average sequence ID (%) : 14.4 +/- 16.1 Average RMSD (Å) : 0.546 +/- 0.120 Consensus geometry
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Consensus Sequence: | XXpXpcXXh |
(φψ)-conformation: | bbpaalpbb |
Pattern: | x | x | [dgrst] | [ADGKRS] | [DEKNS] | [dgn] | x | x | [filtvy] | x |
Conservation: | -0.975 | -0.303 | 0.386 | 0.183 | 1.948 | 1.205 | -0.456 | -0.961 | 0.146 | -1.173 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1a8d_*_391 | 1a8d | - | 394 | 403 | LYDDKNASLG | EE-SSS-EEE | xbxaavxxae |
1c3m_A_41 | 1c3m | A | 48 | 57 | YKDKDNIEYH | EE-TT--EEE | bbxaavxxbb |
1df7_A_143 | 1df7 | A | 143 | 152 | RFSRSGLRYR | EE-TTS-EEE | bbxaavxxbb |
1gpm_A_128 | 1gpm | A | 128 | 137 | ALTADGKPLL | EE-TTS-EEE | bbxaavxwbb |
1jvw_A_88 | 1jvw | A | 94 | 103 | GRLRDGTVFD | EE-TTS-EEE | bbxaavpxab |
1k5n_B_55 | 1k5n | B | 55 | 64 | SFSKDWSFYL | EE-TTS-EEE | bbxaavxxbb |
1l6x_A_397 | 1l6x | A | 397 | 406 | VLDSDGSFFL | EE-TTS-EEE | bxxaavxbbb |
1nbc_A_51 | 1nbc | A | 60 | 69 | IIGSNGSYNG | EE-TT--EEE | bbxaavxbbx |
1oj4_A_3 | 1oj4 | A | 19 | 28 | GQRADGYHTL | EE-TTS-EEE | ebxaavxbxb |
1qho_A_646 | 1qho | A | 653 | 662 | IKRADGTIQW | EE-TTS-EEE | xbxaavxbbx |
1qme_A_79 | 1qme | A | 79 | 88 | IYDRNGVPIA | EE-TTS-EEE | bbxaavxwab |
1rku_A_109 | 1rku | A | 115 | 124 | EIDDSDRVVG | EE-TTS-EEE | bbxaavxxab |
2sli_*_447 | 2sli | - | 452 | 461 | RVDGEYNLYQ | EE-TT-BEEE | bbxaavxxbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1oj4_A_3 | 1oj4 | A | AC2CDM BINDING SITE FOR CHAIN A | K - 10 |
1oj4_A_3 | 1oj4 | A | AC2CDM BINDING SITE FOR CHAIN A | N - 12 |
1oj4_A_3 | 1oj4 | A | AC2CDM BINDING SITE FOR CHAIN A | G - 24 |
1oj4_A_3 | 1oj4 | A | AC2CDM BINDING SITE FOR CHAIN A | Y - 25 |
1oj4_A_3 | 1oj4 | A | AC2CDM BINDING SITE FOR CHAIN A | H - 26 |
Clusters included in this Subclass |
CLUSTER: HA.5.34 |
CLUSTER: HA.6.53 |