ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 2.1.16

Subclass Accession number: 7138
Subclass: 2.1.16

PSSM

Type: EH beta-alpha
DB: ArchDB-EC

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 9

Average sequence ID (%) : 19.4 +/- 17.5
Average RMSD (Å) : 0.489 +/- 0.215

Consensus geometry

d (Å): 9

delta (°): 45-90

theta (°): 135-180

rho (°): 135-180

Consensus Sequence:	XhppXX
(φψ)-conformation:	bbabaa

Pattern:	x	x	[GIV]	[DEKNRTY]	[ADGKST]	[adpsv]	[ade]	[ADEQ]	[AL]	[ADEP]	x	x	[AFILVW]	[ADEKNRS]
Conservation:	-1.187	-1.122	1.273	-0.422	0.054	-0.705	0.763	0.862	2.089	0.449	-1.102	-0.958	0.070	-0.065

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1dv1_B_170	1dv1	B	170	183	RVVRGDAELAQSIS	EEE-SGGGHHHHHH	xbbabaaaaaaaaa
1e4e_A_182	1e4e	A	182	195	KKVNSADELDYAIE	EEE-SGGGHHHHHH	bxbabaaaaaaaaa
1jsc_A_216	1jsc	A	218	231	VMVKSVEELPLRIN	EE--SGGGHHHHHH	bbxabaaaaaaaaa
1k1e_A_102	1k1e	A	104	117	YIGDDSVDLPAFAA	EEE-SGGGHHHHHH	bbbabaaaaaaaaa
1kjq_A_166	1kjq	A	166	179	TFIRSAEQLAQAWK	EEE-SGGGHHHHHH	bxxabaaaaaaaaa
1ozh_A_134	1ozh	A	136	149	IEVTAPDALAEVVS	EE--SGGGHHHHHH	bbxabaaaaaaaaa
1ozh_A_511	1ozh	A	513	526	FAVESAEALEPTLR	EE--SGGGHHHHHH	bbxabaaaaaaaaa
1pox_A_512	1pox	A	514	527	FRVNKIEQLPDVFE	EEE-BGGGHHHHHH	bbbNbaaaaaaaaa
1zpd_A_135	1zpd	A	136	149	EAIYTPEEAPAKID	EEE-SGGGHHHHHH	bxbabaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1e4e_A_182	1e4e	A	GOLGLYCEROL	K - 183
1e4e_A_182	1e4e	A	GOLGLYCEROL	N - 185
1e4e_A_182	1e4e	A	GOLGLYCEROL	E - 195
1e4e_A_182	1e4e	A	GOLGLYCEROL	S - 196
1k1e_A_102	1k1e	A	HGMERCURY (II) ION	T - 102
1k1e_A_102	1k1e	A	HGMERCURY (II) ION	A - 103
1k1e_A_102	1k1e	A	HGMERCURY (II) ION	Y - 104
1k1e_A_102	1k1e	A	COCOBALT (II) ION	G - 106
1k1e_A_102	1k1e	A	COCOBALT (II) ION	D - 107
1k1e_A_102	1k1e	A	COCOBALT (II) ION	D - 108
1k1e_A_102	1k1e	A	COCOBALT (II) ION	D - 111
1k1e_A_102	1k1e	A	HGMERCURY (II) ION	P - 113
1k1e_A_102	1k1e	A	HGMERCURY (II) ION	A - 114
1k1e_A_102	1k1e	A	HGMERCURY (II) ION	F - 115
1k1e_A_102	1k1e	A	HGMERCURY (II) ION	A - 117
1kjq_A_166	1kjq	A	ADPADENOSINE-5'-DIPHOSPHATE	F - 167
1zpd_A_135	1zpd	A	CITCITRIC ACID	A - 146
1zpd_A_135	1zpd	A	CITCITRIC ACID	D - 149
1zpd_A_135	1zpd	A	CITCITRIC ACID	H - 150
1zpd_A_135	1zpd	A	CITCITRIC ACID	V - 151
1zpd_A_135	1zpd	A	CITCITRIC ACID	K - 153
1zpd_A_135	1zpd	A	CITCITRIC ACID	T - 154
1zpd_A_135	1zpd	A	CITCITRIC ACID	R - 157

Clusters included in this Subclass

CLUSTER: EH.5.24

CLUSTER: EH.7.47