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Information on SUBCLASS 5.3.7
Subclass Accession number: 716
Subclass: 5.3.7 PSSM
Type: HA beta-beta hairpin
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 3

Average sequence ID (%) : 11.1 +/- 11.7
Average RMSD (Å) : 0.533 +/- 0.153

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 135-180 rho (°): 45-90
Consensus Sequence: XXXpNXpXX
(φψ)-conformation: bbpaalpbb
Pattern: xx[EGQ]xx[DS][N]x[KNT][CKL]x[AMY]
Conservation:-0.517-0.517-0.041-0.857-0.5171.0002.813-0.3810.094-0.449-0.313-0.313
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1d3b_A_271d3b   A3243LIEAEDNMNCQMEEEE-TT--EEExabbbaavxbxb
1ga6_A_2211ga6   A221232NEGLDSNGKLWAEEEE-TTS-EEEbaexxaavxxbb
1m6k_A_1991m6k   A199210YLQDLDNSTKLYEEEE-TTS-EEEpabbxaavxxbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1d3b_A_271d3b   A     GOLGLYCEROL R - 29
1d3b_A_271d3b   A     GOLGLYCEROL T - 47
1d3b_A_271d3b   A     GOLGLYCEROL V - 48
1d3b_A_271d3b   A     GOLGLYCEROL T - 49
1ga6_A_2211ga6   A     GOLGLYCEROL N - 221
1ga6_A_2211ga6   A     GOLGLYCEROL E - 222
1m6k_A_1991m6k   A     KCXLYSINE NZ-CARBOXYLIC ACID K - 212
1m6k_A_1991m6k   A     MPD2-METHYL-2,4-PENTANEDIOL T - 213
1m6k_A_1991m6k   A     MPD2-METHYL-2,4-PENTANEDIOL G - 214
1m6k_A_1991m6k   A     MPD2-METHYL-2,4-PENTANEDIOL A - 215
1m6k_A_1991m6k   A     MPD2-METHYL-2,4-PENTANEDIOL G - 216

Clusters included in this Subclass
CLUSTER: HA.5.144