Information on SUBCLASS 5.3.7 |
Subclass Accession number: 716
Subclass: 5.3.7 Type: HA beta-beta hairpin DB: ArchDB40 Image coordinates: Consensus coordinates: |
Number of loops: 3 Average sequence ID (%) : 11.1 +/- 11.7 Average RMSD (Å) : 0.533 +/- 0.153 Consensus geometry
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Consensus Sequence: | XXXpNXpXX |
(φψ)-conformation: | bbpaalpbb |
Pattern: | x | x | [EGQ] | x | x | [DS] | [N] | x | [KNT] | [CKL] | x | [AMY] |
Conservation: | -0.517 | -0.517 | -0.041 | -0.857 | -0.517 | 1.000 | 2.813 | -0.381 | 0.094 | -0.449 | -0.313 | -0.313 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1d3b_A_27 | 1d3b | A | 32 | 43 | LIEAEDNMNCQM | EEEE-TT--EEE | xabbbaavxbxb |
1ga6_A_221 | 1ga6 | A | 221 | 232 | NEGLDSNGKLWA | EEEE-TTS-EEE | baexxaavxxbb |
1m6k_A_199 | 1m6k | A | 199 | 210 | YLQDLDNSTKLY | EEEE-TTS-EEE | pabbxaavxxbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1d3b_A_27 | 1d3b | A | GOLGLYCEROL | R - 29 |
1d3b_A_27 | 1d3b | A | GOLGLYCEROL | T - 47 |
1d3b_A_27 | 1d3b | A | GOLGLYCEROL | V - 48 |
1d3b_A_27 | 1d3b | A | GOLGLYCEROL | T - 49 |
1ga6_A_221 | 1ga6 | A | GOLGLYCEROL | N - 221 |
1ga6_A_221 | 1ga6 | A | GOLGLYCEROL | E - 222 |
1m6k_A_199 | 1m6k | A | KCXLYSINE NZ-CARBOXYLIC ACID | K - 212 |
1m6k_A_199 | 1m6k | A | MPD2-METHYL-2,4-PENTANEDIOL | T - 213 |
1m6k_A_199 | 1m6k | A | MPD2-METHYL-2,4-PENTANEDIOL | G - 214 |
1m6k_A_199 | 1m6k | A | MPD2-METHYL-2,4-PENTANEDIOL | A - 215 |
1m6k_A_199 | 1m6k | A | MPD2-METHYL-2,4-PENTANEDIOL | G - 216 |
Clusters included in this Subclass |
CLUSTER: HA.5.144 |