ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 5.6.3

Subclass Accession number: 724
Subclass: 5.6.3

PSSM

Type: HA beta-beta hairpin
DB: ArchDB40

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 3

Average sequence ID (%) : 3.0 +/- 6.2
Average RMSD (Å) : 1.167 +/- 0.231

Consensus geometry

d (Å): 5

delta (°): 45-90

theta (°): 135-180

rho (°): 315-360

Consensus Sequence:	hhpppXcXX
(φψ)-conformation:	bbpabaabb

Pattern:	x	[AIP]	[AVW]	[NRT]	[EKN]	[DRT]	x	[DN]	[ERW]	[RWY]	x
Conservation:	-0.886	-0.669	-0.452	0.307	0.741	-0.343	-0.994	2.459	-0.235	0.632	-0.560

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1eo9_B_447	1eo9	B	447	457	YPWRNRINEWR	EEESSSTTEEE	bwbxaxaaxbx
1k9a_A_35	1k9a	A	39	49	VAVTKDPNWYK	EEE-SSTTEEE	abxxabaabbx
4bcl_*_77	4bcl	-	86	96	DIANETKDRRI	EEEESSSSEEE	bbbxabaabbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1eo9_B_447	1eo9	B	FEFE (III) ION	Y - 447
1eo9_B_447	1eo9	B	FEFE (III) ION	R - 457
4bcl_*_77	4bcl	*	BCLBACTERIOCHLOROPHYLL A	N - 79
4bcl_*_77	4bcl	*	BCLBACTERIOCHLOROPHYLL A	T - 80
4bcl_*_77	4bcl	*	BCLBACTERIOCHLOROPHYLL A	L - 81
4bcl_*_77	4bcl	*	BCLBACTERIOCHLOROPHYLL A	V - 83
4bcl_*_77	4bcl	*	BCLBACTERIOCHLOROPHYLL A	V - 85
4bcl_*_77	4bcl	*	BCLBACTERIOCHLOROPHYLL A	I - 87
4bcl_*_77	4bcl	*	BCLBACTERIOCHLOROPHYLL A	A - 88
4bcl_*_77	4bcl	*	BCLBACTERIOCHLOROPHYLL A	R - 95
4bcl_*_77	4bcl	*	BCLBACTERIOCHLOROPHYLL A	I - 96
4bcl_*_77	4bcl	*	BCLBACTERIOCHLOROPHYLL A	A - 97
4bcl_*_77	4bcl	*	BCLBACTERIOCHLOROPHYLL A	L - 103
4bcl_*_77	4bcl	*	BCLBACTERIOCHLOROPHYLL A	S - 104
4bcl_*_77	4bcl	*	BCLBACTERIOCHLOROPHYLL A	V - 105

Clusters included in this Subclass

CLUSTER: HA.4.152