ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 3.2.8

Subclass Accession number: 7242
Subclass: 3.2.8

PSSM

Type: EH beta-alpha
DB: ArchDB-EC

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 4

Average sequence ID (%) : 15.0 +/- 22.5
Average RMSD (Å) : 0.500 +/- 0.216

Consensus geometry

d (Å): 7

delta (°): 45-90

theta (°): 45-90

rho (°): 135-180

Consensus Sequence:	XpXcXXX
(φψ)-conformation:	bbaapaa

Pattern:	x	x	[NTY]	x	[DEGK]	x	[PR]	[AIK]	[AGN]	[HKR]
Conservation:	-1.000	-0.093	0.156	-1.571	-0.216	-0.346	1.433	-0.981	0.100	1.518

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1aa6_*_355	1aa6	-	355	363	.QYVKDPANR	.EETT-HHHH	.bpaaxaaaa
1dnl_A_81	1dnl	A	82	91	YTNLGSRKAH	EEETTSHHHH	bbxaaxaaaa
1nrg_A_106	1nrg	A	110	119	FTNFESRKGK	EEETTSHHHH	bbxaaxaaaa
1o9j_A_384	1o9j	A	388	397	NVTDDMRIAK	EE-TTSHHHH	lxbaaxaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1dnl_A_81	1dnl	A	MSESELENOMETHIONINE	F - 81
1dnl_A_81	1dnl	A	FMNFLAVIN MONONUCLEOTIDE	F - 81
1dnl_A_81	1dnl	A	FMNFLAVIN MONONUCLEOTIDE	Y - 82
1dnl_A_81	1dnl	A	FMNFLAVIN MONONUCLEOTIDE	T - 83
1dnl_A_81	1dnl	A	FMNFLAVIN MONONUCLEOTIDE	N - 84
1dnl_A_81	1dnl	A	FMNFLAVIN MONONUCLEOTIDE	S - 87
1dnl_A_81	1dnl	A	FMNFLAVIN MONONUCLEOTIDE	R - 88
1dnl_A_81	1dnl	A	FMNFLAVIN MONONUCLEOTIDE	K - 89
1dnl_A_81	1dnl	A	FMNFLAVIN MONONUCLEOTIDE	A - 90
1dnl_A_81	1dnl	A	FMNFLAVIN MONONUCLEOTIDE	Q - 92
1nrg_A_106	1nrg	A	FMNFLAVIN MONONUCLEOTIDE	F - 109
1nrg_A_106	1nrg	A	FMNFLAVIN MONONUCLEOTIDE	F - 110
1nrg_A_106	1nrg	A	PLPPYRIDOXAL-5'-PHOSPHATE	F - 110
1nrg_A_106	1nrg	A	FMNFLAVIN MONONUCLEOTIDE	T - 111
1nrg_A_106	1nrg	A	FMNFLAVIN MONONUCLEOTIDE	N - 112
1nrg_A_106	1nrg	A	PO4PHOSPHATE ION	E - 114
1nrg_A_106	1nrg	A	PO4PHOSPHATE ION	S - 115
1nrg_A_106	1nrg	A	FMNFLAVIN MONONUCLEOTIDE	S - 115
1nrg_A_106	1nrg	A	PO4PHOSPHATE ION	R - 116
1nrg_A_106	1nrg	A	FMNFLAVIN MONONUCLEOTIDE	R - 116
1nrg_A_106	1nrg	A	FMNFLAVIN MONONUCLEOTIDE	K - 117
1nrg_A_106	1nrg	A	FMNFLAVIN MONONUCLEOTIDE	G - 118
1nrg_A_106	1nrg	A	PO4PHOSPHATE ION	K - 119

Clusters included in this Subclass

CLUSTER: EH.3.172