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Information on SUBCLASS 5.8.1
Subclass Accession number: 726
Subclass: 5.8.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
EC : 5.2 (>75 %)  5.2.1 (>75 %)  5.2.1.8
SCOP : 50352 (>75 %)  54533 (>75 %)  54534 (>75 %)  54535 (>75 %)  
Number of loops: 10

Average sequence ID (%) : 14.0 +/- 17.7
Average RMSD (Å) : 0.420 +/- 0.169

Consensus geometry
d (Å): 7 delta (°): 90-135 theta (°): 90-135 rho (°): 315-360
Consensus Sequence: pXXppcXhh
(φψ)-conformation: bbaaalpbb
Pattern: [ACFIMVW]x[gknrs]x[adgkqs][ACDNST][DGKNS][klt]x[ilmvy]
Conservation:0.1830.384-0.409-1.175-0.6020.4851.955-1.093-0.7641.035
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1bm8_*_241bm8   -2635MKRKKDDWVNEEETTT--EEbbxaaavxbx
1hnf_*_301hnf   -3544WEKTSDKKKIEEEGGG--EEbbbaaalbxa
1ihk_A_1041ihk   A107116IRGVDSGLYLEEETTT--EEbbxaaavxxx
1jlx_A_571jlx   A5968IKSRYTNKYLEEETTT--EEbbxaaavbxx
1knm_A_921knm   A92101VVGVQSGLCLEEETTT--EEbbxaaavxxp
1m2t_B_4721m2t   B472481ILNLKNGLAMEEETTT--EEbbxaaavxbx
1mnn_A_1521mnn   A159168AKNDDDDTEIEEETTT--EEbbxaaavxxb
1n4k_A_3031n4k   A305314FKHLATGHYLEEETTT--EEbxxaaavxbx
1q14_A_1361q14   A141150CHCIGCGKVYEEETTT--EEbbxaaavpxb
1q1u_A_531q1u   A5665IQGVKASLYVEEETTT--EEbbxaaalbxx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1jlx_A_571jlx   A     FORFORMYL GROUP V - 57
1knm_A_921knm   A     LATLACTOSE D - 102
1knm_A_921knm   A     LATLACTOSE A - 103
1m2t_B_4721m2t   B     NAGN-ACETYL-D-GLUCOSAMINE L - 475
1m2t_B_4721m2t   B     GOLGLYCEROL D - 482
1m2t_B_4721m2t   B     GOLGLYCEROL V - 483
1q14_A_1361q14   A     ZN2ZINC ION ON 3-FOLD CRYSTAL AXIS C - 143
1q14_A_1361q14   A     ZN2ZINC ION ON 3-FOLD CRYSTAL AXIS I - 144
1q14_A_1361q14   A     ZN2ZINC ION ON 3-FOLD CRYSTAL AXIS G - 145
1q14_A_1361q14   A     ZN2ZINC ION ON 3-FOLD CRYSTAL AXIS C - 146
1q14_A_1361q14   A     ZN2ZINC ION ON 3-FOLD CRYSTAL AXIS G - 147
1q14_A_1361q14   A     ZN2ZINC ION ON 3-FOLD CRYSTAL AXIS K - 148
1q14_A_1361q14   A     ZN2ZINC ION ON 3-FOLD CRYSTAL AXIS Y - 150

Clusters included in this Subclass
CLUSTER: HA.4.44