Information on SUBCLASS 5.8.1 |
Subclass Accession number: 726
Subclass: 5.8.1 Type: HA beta-beta hairpin DB: ArchDB40 Image coordinates: Consensus coordinates: Conserved Annotation EC : 5.2 (>75 %) 5.2.1 (>75 %) 5.2.1.8 SCOP : 50352 (>75 %) 54533 (>75 %) 54534 (>75 %) 54535 (>75 %) |
Number of loops: 10 Average sequence ID (%) : 14.0 +/- 17.7 Average RMSD (Å) : 0.420 +/- 0.169 Consensus geometry
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Consensus Sequence: | pXXppcXhh |
(φψ)-conformation: | bbaaalpbb |
Pattern: | [ACFIMVW] | x | [gknrs] | x | [adgkqs] | [ACDNST] | [DGKNS] | [klt] | x | [ilmvy] |
Conservation: | 0.183 | 0.384 | -0.409 | -1.175 | -0.602 | 0.485 | 1.955 | -1.093 | -0.764 | 1.035 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1bm8_*_24 | 1bm8 | - | 26 | 35 | MKRKKDDWVN | EEETTT--EE | bbxaaavxbx |
1hnf_*_30 | 1hnf | - | 35 | 44 | WEKTSDKKKI | EEEGGG--EE | bbbaaalbxa |
1ihk_A_104 | 1ihk | A | 107 | 116 | IRGVDSGLYL | EEETTT--EE | bbxaaavxxx |
1jlx_A_57 | 1jlx | A | 59 | 68 | IKSRYTNKYL | EEETTT--EE | bbxaaavbxx |
1knm_A_92 | 1knm | A | 92 | 101 | VVGVQSGLCL | EEETTT--EE | bbxaaavxxp |
1m2t_B_472 | 1m2t | B | 472 | 481 | ILNLKNGLAM | EEETTT--EE | bbxaaavxbx |
1mnn_A_152 | 1mnn | A | 159 | 168 | AKNDDDDTEI | EEETTT--EE | bbxaaavxxb |
1n4k_A_303 | 1n4k | A | 305 | 314 | FKHLATGHYL | EEETTT--EE | bxxaaavxbx |
1q14_A_136 | 1q14 | A | 141 | 150 | CHCIGCGKVY | EEETTT--EE | bbxaaavpxb |
1q1u_A_53 | 1q1u | A | 56 | 65 | IQGVKASLYV | EEETTT--EE | bbxaaalbxx |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1jlx_A_57 | 1jlx | A | FORFORMYL GROUP | V - 57 |
1knm_A_92 | 1knm | A | LATLACTOSE | D - 102 |
1knm_A_92 | 1knm | A | LATLACTOSE | A - 103 |
1m2t_B_472 | 1m2t | B | NAGN-ACETYL-D-GLUCOSAMINE | L - 475 |
1m2t_B_472 | 1m2t | B | GOLGLYCEROL | D - 482 |
1m2t_B_472 | 1m2t | B | GOLGLYCEROL | V - 483 |
1q14_A_136 | 1q14 | A | ZN2ZINC ION ON 3-FOLD CRYSTAL AXIS | C - 143 |
1q14_A_136 | 1q14 | A | ZN2ZINC ION ON 3-FOLD CRYSTAL AXIS | I - 144 |
1q14_A_136 | 1q14 | A | ZN2ZINC ION ON 3-FOLD CRYSTAL AXIS | G - 145 |
1q14_A_136 | 1q14 | A | ZN2ZINC ION ON 3-FOLD CRYSTAL AXIS | C - 146 |
1q14_A_136 | 1q14 | A | ZN2ZINC ION ON 3-FOLD CRYSTAL AXIS | G - 147 |
1q14_A_136 | 1q14 | A | ZN2ZINC ION ON 3-FOLD CRYSTAL AXIS | K - 148 |
1q14_A_136 | 1q14 | A | ZN2ZINC ION ON 3-FOLD CRYSTAL AXIS | Y - 150 |
Clusters included in this Subclass |
CLUSTER: HA.4.44 |