Information on SUBCLASS 5.10.1 |
Subclass Accession number: 732
Subclass: 5.10.1 Type: HA beta-beta hairpin DB: ArchDB40 Image coordinates: Consensus coordinates: |
Number of loops: 14 Average sequence ID (%) : 7.8 +/- 10.5 Average RMSD (Å) : 0.936 +/- 0.350 Consensus geometry
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Consensus Sequence: | XpXXpXpXX |
(φψ)-conformation: | bbpaababb |
Pattern: | x | x | [HKRST] | x | [adekrst] | [dekns] | x | [dhnpqs] | x | x | x | x |
Conservation: | -0.723 | 0.172 | 2.573 | -0.691 | -0.435 | 1.036 | -0.128 | 0.641 | -0.663 | -0.827 | -0.678 | -0.277 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1b63_A_107 | 1b63 | A | 111 | 122 | TSRTAEQQEAWQ | EEE-TT-SSEEE | bbbxaabaxbbb |
1cjx_A_36 | 1cjx | A | 38 | 49 | VATHRSKNVHLY | EEEESSSSEEEE | abbpaNbabbbb |
1fgu_A_330 | 1fgu | A | 331 | 342 | KITVRSNNREVA | EEE-SSSS-EEE | xxbxaabaxbbx |
1h0h_B_126 | 1h0h | B | 126 | 135 | .RKVAESNQMA. | .EE-TTSS-EE. | .bxxaabaxbb. |
1j71_A_278 | 1j71 | A | 278 | 289 | ILKDSDSSICYF | EEE-SSSS-EEE | bbbxaaxaxbbx |
1juv_A_105 | 1juv | A | 106 | 117 | QVSSPNAPFETM | EEE-TTSS-EEE | bbbpaabapbbx |
1mda_H_269 | 1mda | H | 269 | 280 | VAKLKNTDGIMI | EEEETTTTEEEE | bbbxaababbxb |
1n8y_C_581 | 1n8y | C | 582 | 593 | GVKPDLSYMPIW | EE--TT-S--EE | vxbpaabaxxxb |
1q44_A_29 | 1q44 | A | 29 | 40 | KEKGWLVSEIYE | EEE-SSSSEEEE | bbxxaababbbx |
1q52_A_37 | 1q52 | A | 39 | 50 | YHRHVDDATVRV | EEEESSSSEEEE | bbbxaaxabbbb |
1qdl_B_159 | 1qdl | B | 161 | 172 | AIHHEEYPIYGV | EEEESSSSEEEE | bbbxaaxabbbb |
1s7j_A_175 | 1s7j | A | 178 | 189 | TASGDSVDFVSR | EEE-SSSSEEEE | bexxaababbbb |
1tn3_*_49 | 1tn3 | - | 50 | 61 | CLKGTKVHMKCF | EEE-SSSSEEEE | bbxxaaxabbbb |
3lkf_A_32 | 3lkf | A | 40 | 51 | FIKDKSYDKDTL | EEEETTSSSEEE | xbxbaababxbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1b63_A_107 | 1b63 | A | ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER | L - 110 |
1b63_A_107 | 1b63 | A | ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER | S - 112 |
1h0h_B_126 | 1h0h | B | EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID | R - 126 |
1q44_A_29 | 1q44 | A | MLAMALONIC ACID | L - 34 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1h0h_B_126 | 1h0h | B | AC7EPE BINDING SITE FOR CHAIN A | R - 126 |
Clusters included in this Subclass |
CLUSTER: HA.4.124 |
CLUSTER: HA.5.35 |
CLUSTER: HA.6.40 |
CLUSTER: HA.7.31 |