Information on SUBCLASS 5.11.1 |
Subclass Accession number: 733
Subclass: 5.11.1 Type: HA beta-beta hairpin DB: ArchDB40 Image coordinates: Consensus coordinates: |
Number of loops: 8 Average sequence ID (%) : 7.1 +/- 9.3 Average RMSD (Å) : 1.025 +/- 0.071 Consensus geometry
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Consensus Sequence: | XXXpXXXXX |
(φψ)-conformation: | bbaabppbb |
Pattern: | x | [civwy] | [FGITV] | x | x | [iktv] | [DEGKRST] | x | [DGNPT] | x | x | x | x |
Conservation: | 0.957 | 0.373 | 0.400 | -1.014 | -1.025 | 0.839 | 1.374 | -0.893 | 1.734 | -1.015 | -0.816 | -0.141 | -0.773 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1g0u_H_173 | 1g0u | H | 175 | 187 | VCVMEIGKDAEYL | EEEEESSS--EEE | bbbbxaabxxbxx |
1g9g_A_301 | 1g9g | A | 301 | 313 | AWGGGIDSTWSWI | EEEEESSS--EEE | bbbbxaabxbbbb |
1h6l_A_70 | 1h6l | A | 71 | 83 | LITTNKKSGLAVY | EEEEETTS--EEE | bbbbbaabxxbbb |
1i4g_A_181 | 1i4g | A | 184 | 196 | IVFATSTEPSVNY | EEEE-SSS--EEE | bbbxbaabwxbbb |
1jnr_A_189 | 1jnr | A | 192 | 204 | AVGFSVREPKFYV | EEEEESSSS-EEE | bbbbxaabxbxbb |
1m2k_A_117 | 1m2k | A | 120 | 132 | RVVRCTSCNNSFE | EEEEESSSS-EEE | abbbxaaxxbbbb |
1nbf_A_326 | 1nbf | A | 330 | 342 | SYIQCKEVDYRSD | EEEEESSS--EEE | bbbbxaabxbbbb |
1o75_A_395 | 1o75 | A | 398 | 410 | VEVRFKEFGSVRA | EEEE-SSS--EEE | bbxbxaabxxbbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1h6l_A_70 | 1h6l | A | CACALCIUM ION | K - 76 |
1h6l_A_70 | 1h6l | A | PO4PHOSPHATE ION | K - 76 |
1i4g_A_181 | 1i4g | A | ZNZINC ION | V - 185 |
1i4g_A_181 | 1i4g | A | ZNZINC ION | A - 187 |
1m2k_A_117 | 1m2k | A | ZNZINC ION | C - 124 |
1m2k_A_117 | 1m2k | A | ZNZINC ION | T - 125 |
1m2k_A_117 | 1m2k | A | ZNZINC ION | S - 126 |
1m2k_A_117 | 1m2k | A | ZNZINC ION | C - 127 |
1m2k_A_117 | 1m2k | A | ZNZINC ION | N - 128 |
1m2k_A_117 | 1m2k | A | ZNZINC ION | N - 129 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1h6l_A_70 | 1h6l | A | AC9PRODUCT PO4 502 BINDING SITE FOR CHAIN A | K - 76 |
Clusters included in this Subclass |
CLUSTER: HA.5.54 |
CLUSTER: HA.6.49 |
CLUSTER: HA.6.81 |